Flexibility in a drug transport accessory protein: molecular dynamics simulations of MexA. (Q41667323)

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20 January 2020

title

Flexibility in a drug transport accessory protein: molecular dynamics simulations of MexA (English)

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20 January 2020

2

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20 January 2020

Mark S.P. Sansom

series ordinal

3

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20 January 2020

author name string

Loredana Vaccaro

series ordinal

1

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20 January 2020

language of work or name

English

0 references

publication date

28 April 2006

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20 January 2020

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20 January 2020

volume

91

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20 January 2020

issue

2

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20 January 2020

page(s)

558-564

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Conformational flexibility in the multidrug efflux system protein AcrA.

20 January 2020

cites work

1 reference

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The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 A resolution.

6 June 2018

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Three's company: component structures bring a closer view of tripartite drug efflux pumps.

6 June 2018

1 reference

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Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end.

6 June 2018

1 reference

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Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.

6 June 2018

1 reference

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Structure of the periplasmic component of a bacterial drug efflux pump

6 June 2018

1 reference

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Structure and function of TolC: the bacterial exit duct for proteins and drugs.

6 June 2018

1 reference

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Assembly of the MexAB-OprM multidrug efflux system of Pseudomonas aeruginosa: identification and characterization of mutations in mexA compromising MexA multimerization and interaction with MexB.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Conformational changes associated with protein-protein interactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Chimeric analysis of AcrA function reveals the importance of its C-terminal domain in its interaction with the AcrB multidrug efflux pump

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Crystal structure of bacterial multidrug efflux transporter AcrB

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Molecular dynamics simulations of biomolecules

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Transition to the open state of the TolC periplasmic tunnel entrance

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Analysis of a 10-ns molecular dynamics simulation of mouse acetylcholinesterase

6 June 2018

1 reference

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Type I secretion and multidrug efflux: transport through the TolC channel-tunnel

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

AcrA is a highly asymmetric protein capable of spanning the periplasm

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Multidrug efflux pumps of gram-negative bacteria

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Evidence that TolC is required for functioning of the Mar/AcrAB efflux pump of Escherichia coli

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

VMD: visual molecular dynamics

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Multiple antibiotic resistance in Pseudomonas aeruginosa: evidence for involvement of an efflux operon

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Multidrug resistance pumps in bacteria: variations on a theme

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Essential dynamics of proteins

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

WHAT IF: a molecular modeling and drug design program

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1483075

A model of a transmembrane drug-efflux pump from Gram-negative bacteria

6 June 2018

1 reference

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Dynamite: a simple way to gain insight into protein motions

18 August 2018

1 reference

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Interactions underlying assembly of the Escherichia coli AcrAB-TolC multidrug efflux system.

18 August 2018

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pH-induced conformational changes of AcrA, the membrane fusion protein of Escherichia coli multidrug efflux system

18 August 2018

1 reference

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Large-amplitude nonlinear motions in proteins

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16648168

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.105.080010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16648168 AND SRC:MED&resulttype=core&format=json

20 January 2020

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20 January 2020

PubMed publication ID

16648168

1 reference