Distribution, Diversity, and Long-Term Retention of Grass Short Interspersed Nuclear Elements (SINEs). (Q41623170)

5 October 2017

Distribution, Diversity, and Long-Term Retention of Grass Short Interspersed Nuclear Elements (SINEs). (English)

1 reference

5 October 2017

Hongliang Mao

1

1 reference

PMC publication ID

5585668

5 October 2017

Hao Wang

series ordinal

2

1 reference

5 October 2017

1 August 2017

1 reference

Genome Biology and Evolution

5 October 2017

1 reference

5 October 2017

9

1 reference

5 October 2017

8

1 reference

5 October 2017

2048-2056

1 reference

SINE_scan: an efficient tool to discover short interspersed nuclear elements (SINEs) in large-scale genomic datasets

5 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Short interspersed nuclear elements (SINEs) are abundant in Solanaceae and have a family-specific impact on gene structure and genome organization.

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Recurrent loss of specific introns during angiosperm evolution

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

The contributions of transposable elements to the structure, function, and evolution of plant genomes

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Widespread and frequent horizontal transfers of transposable elements in plants

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

SINEBase: a database and tool for SINE analysis

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Alu elements: know the SINEs

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Origin and evolution of SINEs in eukaryotic genomes.

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Comparative analysis of Alu repeats in primate genomes

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

A unified classification system for eukaryotic transposable elements

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Short interspersed elements (SINEs) in plants: origin, classification, and use as phylogenetic markers

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Horizontal transfer of a plant transposon

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

LINE-mediated retrotransposition of marked Alu sequences

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Alu repeats and human genomic diversity

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Initial sequencing and analysis of the human genome

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

EMBOSS: the European Molecular Biology Open Software Suite

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

LINEs and Alus--the polyA connection

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

DNA and the neutral theory

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Master genes in mammalian repetitive DNA amplification

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Sequence organization of the human genome

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

LINEs mobilize SINEs in the eel through a shared 3' sequence.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

An analysis of retroposition in plants based on a family of SINEs from Brassica napus

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Evolution of the master Alu gene(s)

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

Targeted identification of short interspersed nuclear element families shows their widespread existence and extreme heterogeneity in plant genomes

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5585668

S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: identification of a preferred target site for asymmetrical methylation

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/GBE/EVX145

Grass genome organization and evolution

21 January 2018

1 reference

12 December 2020

New SINE families from rice, OsSN, with poly(A) at the 3' ends

1 reference

12 December 2020

A ubiquitous family of repeated DNA sequences in the human genome

1 reference

12 December 2020

A novel Au SINE sequence found in a gymnosperm

1 reference

12 December 2020

A SINE family widely distributed in the plant kingdom and its evolutionary history

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVX145

1 reference

5 October 2017

1 reference

PMC publication ID

5585668

5 October 2017

PubMed publication ID

28903462

1 reference

PMC publication ID

5585668