SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants (Q41576888)

4 October 2017

SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants (English)

1 reference

4 October 2017

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1

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author name string

Yun Zheng

1

1 reference

4 October 2017

Yong-Fang Li

2

1 reference

4 October 2017

Ramanjulu Sunkar

3

1 reference

4 October 2017

Weixiong Zhang

4

1 reference

4 October 2017

language of work or name

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2 December 2011

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4 October 2017

Nucleic Acids Research

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4 October 2017

40

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4 October 2017

4

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4 October 2017

e28

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

4 October 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

6 June 2018

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Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

6 June 2018

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Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus

6 June 2018

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Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

6 June 2018

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Transcriptome-wide identification of microRNA targets in rice

6 June 2018

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Rice MicroRNA effector complexes and targets

6 June 2018

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Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

6 June 2018

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The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis

6 June 2018

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Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families

6 June 2018

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Origin, biogenesis, and activity of plant microRNAs

6 June 2018

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Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.

6 June 2018

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CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

6 June 2018

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A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

6 June 2018

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

6 June 2018

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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

6 June 2018

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Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).

6 June 2018

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Identification of novel and candidate miRNAs in rice by high throughput sequencing

6 June 2018

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miRBase: tools for microRNA genomics

6 June 2018

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

6 June 2018

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A two-hit trigger for siRNA biogenesis in plants

6 June 2018

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Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development

6 June 2018

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MicroRNAS and their regulatory roles in plants

6 June 2018

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miRU: an automated plant miRNA target prediction server

6 June 2018

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A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes

6 June 2018

1 reference

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

6 June 2018

1 reference

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Cloning and characterization of microRNAs from rice

6 June 2018

1 reference

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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

6 June 2018

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MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

6 June 2018

1 reference

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

6 June 2018

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

6 June 2018

1 reference

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Statistical significance for genomewide studies

6 June 2018

1 reference

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Prediction of plant microRNA targets

6 June 2018

1 reference

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Target-align: a tool for plant microRNA target identification

6 June 2018

1 reference

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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

19 August 2018

1 reference

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MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

19 August 2018

1 reference

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A toolkit for analysing large-scale plant small RNA datasets

19 August 2018

1 reference

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Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287166

Specific Effects of MicroRNAs on the Plant Transcriptome

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287166

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22140118

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

OsSPL14 promotes panicle branching and higher grain productivity in rice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22140118

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR1092

1 reference

release_md32wgzr7jf7bdney4ft2vvlnm

4 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/md32wgzr7jf7bdney4ft2vvlnm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

4 October 2017

PubMed publication ID

22140118

1 reference