Differential regulation of genes by retrotransposons in rice promoters. (Q41387313)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

title

Differential regulation of genes by retrotransposons in rice promoters (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

0 references

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Surendar Reddy Dhadi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

Zijun Xu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

Rafi Shaik

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

Kyle Driscoll

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

publication date

20 February 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

published in

Plant Molecular Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

volume

87

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

603-613

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

The contributions of transposable elements to the structure, function, and evolution of plant genomes

1 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

B2 SINE retrotransposon causes polymorphic expression of mouse 5-aminolevulinic acid synthase 1 gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Transposable elements re-wire and fine-tune the transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

A single p450 allele associated with insecticide resistance in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Major cis-regulatory elements for rice bidirectional promoter activity reside in the 5'-untranslated regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Transcription of two human genes from a bidirectional endogenous retrovirus promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

The regulated retrotransposon transcriptome of mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Transposable elements and the evolution of regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

The adaptive role of transposable elements in the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Molecular Structure of the GARP Family of Plant Myb-Related DNA Binding Motifs of the Arabidopsis Response Regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Effect of the transposable element environment of human genes on gene length and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Origin of a substantial fraction of human regulatory sequences from transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

The trihelix family of transcription factors--light, stress and development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Recombinational cloning with plant gateway vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

OsWRKY71, a rice transcription factor, is involved in rice defense response

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Controlling elements and the gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

In planta analysis of a cis-regulatory cytokinin response motif in Arabidopsis and identification of a novel enhancer sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Transposable elements: an abundant and natural source of regulatory sequences for host genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Strong selective sweep associated with a transposon insertion in Drosophila simulans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Alternative promoters and repetitive DNA elements define the species-dependent tissue-specific expression of the FMO1 genes of human and mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Identification of a functional transposon insertion in the maize domestication gene tb1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Regulation of mammalian gene expression by retroelements and non-coding tandem repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

White grapes arose through the mutation of two similar and adjacent regulatory genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Polymorphisms and evolutionary history of retrotransposon insertions in rice promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S11103-015-0300-7

Footprinting with an automated capillary DNA sequencer

21 January 2018

1 reference

12 December 2020

Three type-B response regulators, ARR1, ARR10 and ARR12, play essential but redundant roles in cytokinin signal transduction throughout the life cycle of Arabidopsis thaliana

1 reference

12 December 2020

Grass genome organization and evolution

1 reference

12 December 2020

Retrotransposon-induced mutations in grape skin color

1 reference

12 December 2020

Analysis of genes associated with retrotransposons in the rice genome

1 reference

12 December 2020

Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region

1 reference

12 December 2020

GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants

1 reference

12 December 2020

Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history

1 reference

12 December 2020

10.1007/S11103-015-0300-7

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 March 2020

1051518928

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25697955 AND SRC:MED&resulttype=core&format=json