Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis (Q41131416)

27 September 2017

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis (English)

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27 September 2017

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8

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Piet Maes

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Piet Maes

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Marc Van Ranst

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Jelle Matthijnssens

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

7

Claude Kwe Yinda

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

5

Leen Beller

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

2

Mark Zeller

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

6

Ward Deboutte

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

12

Elisabeth Heylen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Nádia Conceição-Neto

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Hanne Lefrère

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

Pieter De Bruyn

4

1 reference

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7 June 2020

language of work or name

English

0 references

publication date

12 November 2015

1 reference

27 September 2017

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7 June 2020

volume

5

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7 June 2020

page(s)

16532

1 reference

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Creative Commons Attribution 4.0 International

7 June 2020

copyright license

start time

12 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool

1 reference

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Ocean plankton. Structure and function of the global ocean microbiome

27 September 2017

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Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses

27 September 2017

1 reference

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Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Soil microbiome responses to the short-term effects of Amazonian deforestation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Metagenomic profile of the viral communities in Rhipicephalus spp. ticks from Yunnan, China

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Origins and evolution of viruses of eukaryotes: The ultimate modularity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Disease-specific alterations in the enteric virome in inflammatory bowel disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Viral metagenomic analysis of feces of wild small carnivores

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Altered oral viral ecology in association with periodontal disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Feline fecal virome reveals novel and prevalent enteric viruses

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Trimmomatic: a flexible trimmer for Illumina sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

The general composition of the faecal virome of pigs depends on age, but not on feeding with a probiotic bacterium

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

AIDS alters the commensal plasma virome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

First isolation of Mimivirus in a patient with pneumonia

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Evidence of the megavirome in humans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

FastUniq: a fast de novo duplicates removal tool for paired short reads

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn's disease.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Going viral: next-generation sequencing applied to phage populations in the human gut.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Gut microbiota composition correlates with diet and health in the elderly

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

The fecal viral flora of wild rodents

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Intestinal Microbiota of Dogs and Cats: a Bigger World than We Thought

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Prokaryotic and eukaryotic diversity of the human gut.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

The Sequence Alignment/Map format and SAMtools

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Fast and accurate short read alignment with Burrows-Wheeler transform

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Laboratory procedures to generate viral metagenomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Viral diversity and dynamics in an infant gut.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Virioplankton 'pegylation': use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Gut virome sequencing in children with early islet autoimmunity.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Evaluation of convenient pretreatment protocols for RNA virus metagenomics in serum and tissue samples

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Protocol for metagenomic virus detection in clinical specimens

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Novel hybrid parvovirus-like virus, NIH-CQV/PHV, contaminants in silica column-based nucleic acid extraction kits

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Shan virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

An international inter-laboratory ring trial to evaluate a real-time PCR assay for the detection of bovine herpesvirus 1 in extended bovine semen.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4642273

The density of ribosomes bearing messenger RNA in phage-infected and normal bacteria

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26559140

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

One-tube fluorogenic reverse transcription-polymerase chain reaction for the quantitation of feline coronaviruses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26559140

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP16532

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

26559140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26559140 AND SRC:MED&resulttype=core&format=json