Hybrid assembly with long and short reads improves discovery of gene family expansions (Q41065868)

26 September 2017

Hybrid assembly with long and short reads improves discovery of gene family expansions (English)

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26 September 2017

1

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5 June 2020

Robert M. Stupar

9

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5 June 2020

Nevin D Young

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5 June 2020

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Susan R McCouch

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5 June 2020

12

Namrata Singh

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13

Lyza G Maron

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5 June 2020

author name string

Peng Zhou

2

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5 June 2020

Joann Mudge

3

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5 June 2020

James Gurtowski

4

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5 June 2020

Hayan Lee

5

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5 June 2020

Thiruvarangan Ramaraj

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5 June 2020

Brian P Walenz

7

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5 June 2020

Junqi Liu

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5 June 2020

Roxanne Denny

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5 June 2020

Li Song

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5 June 2020

W Richard McCombie

15

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5 June 2020

Michael C Schatz

16

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5 June 2020

Peter Tiffin

17

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5 June 2020

Kevin A T Silverstein

19

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5 June 2020

language of work or name

English

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publication date

19 July 2017

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26 September 2017

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5 June 2020

volume

18

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5 June 2020

issue

1

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5 June 2020

page(s)

541

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describes a project that uses

5 June 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

26 September 2017

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26 September 2017

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26 September 2017

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26 September 2017

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Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms

26 September 2017

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26 September 2017

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Assembly and diploid architecture of an individual human genome via single-molecule technologies

26 September 2017

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Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

26 September 2017

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Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

26 September 2017

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One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

26 September 2017

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

26 September 2017

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SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

26 September 2017

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Structural variations in plant genomes

26 September 2017

1 reference

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An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

26 September 2017

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Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

26 September 2017

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

26 September 2017

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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

26 September 2017

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The advantages of SMRT sequencing

26 September 2017

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

26 September 2017

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26 September 2017

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Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

26 September 2017

1 reference

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Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

26 September 2017

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Finished bacterial genomes from shotgun sequence data

26 September 2017

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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

26 September 2017

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Hybrid error correction and de novo assembly of single-molecule sequencing reads

26 September 2017

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Current challenges in de novo plant genome sequencing and assembly

26 September 2017

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26 September 2017

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Repetitive DNA and next-generation sequencing: computational challenges and solutions

26 September 2017

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The Medicago genome provides insight into the evolution of rhizobial symbioses

26 September 2017

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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

26 September 2017

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26 September 2017

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26 September 2017

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Discovery and genotyping of genome structural polymorphism by sequencing on a population scale

26 September 2017

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26 September 2017

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Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales

26 September 2017

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26 September 2017

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BLAST : architecture and applications

26 September 2017

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Gene duplication and evolutionary novelty in plants

26 September 2017

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The map-based sequence of the rice genome

26 September 2017

1 reference

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The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

26 September 2017

1 reference

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Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene

26 September 2017

1 reference

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Whole-genome shotgun assembly and comparison of human genome assemblies

26 September 2017

1 reference

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Versatile and open software for comparing large genomes

26 September 2017

1 reference

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An efficient algorithm for large-scale detection of protein families

26 September 2017

1 reference

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A whole-genome assembly of Drosophila

26 September 2017

1 reference

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Improved maize reference genome with single-molecule technologies

26 September 2017

1 reference

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The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection

19 August 2018

1 reference

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Aggressive assembly of pyrosequencing reads with mates

19 August 2018

1 reference

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A genome-wide association study of seed protein and oil content in soybean.

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/S12864-017-3927-8

10.1186/S12864-017-3927-8

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724409 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 June 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-3927-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724409 AND SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

28724409

1 reference