Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution. (Q40984243)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

title

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution (English)

1 reference

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25 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

Gary H. Karpen

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

author name string

Yuh Chwen G Lee

series ordinal

1

1 reference

25 September 2017

Gary H Karpen

series ordinal

2

1 reference

25 September 2017

language of work or name

English

0 references

publication date

11 July 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

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25 March 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

describes a project that uses

25 March 2020

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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25 September 2017

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1 reference

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Chromatin modifications and their function

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Chromosome Constitution and Behavior in Eversporting and Mottling in Drosophila Melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Transposable elements in mendelian populations. I. A theory

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

A germline-specific class of small RNAs binds mammalian Piwi proteins

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Recently mobilized transposons in the human and chimpanzee genomes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Combined evidence annotation of transposable elements in genome sequences

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Pesticide Resistance via Transposition-Mediated Adaptive Gene Truncation in Drosophila

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Genome size: does bigger mean worse?

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Strong selective sweep associated with a transposon insertion in Drosophila simulans.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The origins of genome complexity

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Transposable elements in sexual and ancient asexual taxa

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Transposon dynamics and the breeding system

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The genome sequence of Drosophila melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The molecular basis of genetic dominance

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Horizontal transmission, vertical inactivation, and stochastic loss of mariner-like transposable elements

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Differing levels of dispersed repetitive DNA among closely related species of Drosophila

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The evolutionary advantage of recombination

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Dosage-dependent modifiers of position effect variegation in Drosophila and a mass action model that explains their effect

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Insertional mutagenesis of the Drosophila genome with single P elements

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The population genetics of Drosophila transposable elements

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Transposable elements and fitness in Drosophila melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Position effect variegation in Drosophila melanogaster: relationship between suppression effect and the amount of Y chromosome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Evidence for horizontal transmission of the P transposable element between Drosophila species

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The effects of chromosome rearrangements on the expression of heterochromatic genes in chromosome 2L of Drosophila melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

The effect of modifiers of position-effect variegation on the variegation of heterochromatic genes of Drosophila melanogaster

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

25 September 2017

Transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Mutations affecting fitness in Drosophila populations

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Direct interrogation of the role of H3K9 in metazoan heterochromatin function.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Epigenetic interplay between mouse endogenous retroviruses and host genes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

KMC 2: fast and resource-frugal k-mer counting

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Identical satellite DNA sequences in sibling species of Drosophila

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Horizontal Transfer Can Drive a Greater Transposable Element Load in Large Populations

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Patterns of population epigenomic diversity.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Rapid sequence turnover at an intergenic locus in Drosophila

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

A single p450 allele associated with insecticide resistance in Drosophila.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Wake up of transposable elements following Drosophila simulans worldwide colonization.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Transposable elements in inbreeding and outbreeding populations

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5505702

Fitting Linear Mixed-Effects Models Using lme4

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554/ELIFE.25762

The evolutionary dynamics of repetitive DNA in eukaryotes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554/ELIFE.25762

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554/ELIFE.25762

The effect of linkage on limits to artificial selection

21 January 2018

1 reference

12 December 2020

The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster

1 reference

12 December 2020

The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution

1 reference

12 December 2020

A study of ten families of transposable elements on X chromosomes from a population of Drosophila melanogaster

1 reference

12 December 2020

Transposable Element Dynamics in Two Sibling Species: Drosophila Melanogaster and Drosophila Simulans

1 reference

12 December 2020

EFFECT OF TEMPERATURE ON EVERSPORTING EYE COLOR IN DROSOPHILA MELANOGASTER

1 reference

12 December 2020

Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes

1 reference

12 December 2020

On the role of unequal exchange in the containment of transposable element copy number

1 reference

12 December 2020

Identifiers

DOI

10.7554/ELIFE.25762

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28695823 AND SRC:MED&resulttype=core&format=json

25 March 2020

PubMed publication ID

28695823

1 reference