Impact of sampling density on the extent of HIV clustering. (Q40794836)

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20 February 2020

title

Impact of sampling density on the extent of HIV clustering (English)

1 reference

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20 February 2020

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2

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20 February 2020

Max Essex

series ordinal

5

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20 February 2020

1

Vlad Novitsky

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20 February 2020

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3

Quanhong Lei

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20 February 2020

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Victor DeGruttola

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20 February 2020

publication date

1 December 2014

1 reference

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AIDS Research and Human Retroviruses

20 February 2020

published in

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20 February 2020

volume

30

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20 February 2020

issue

12

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20 February 2020

page(s)

1226-1235

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Using HIV networks to inform real time prevention interventions

20 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Linkage of viral sequences among HIV-infected village residents in Botswana: estimation of linkage rates in the presence of missing data

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Automated analysis of phylogenetic clusters

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

The global transmission network of HIV-1

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Phylogenetic inferences on HIV-1 transmission: implications for the design of prevention and treatment interventions

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Phylodynamics of HIV-1 subtype C epidemic in east Africa

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Using HIV transmission networks to investigate community effects in HIV prevention trials

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Transmission network parameters estimated from HIV sequences for a nationwide epidemic

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Phylodynamics of infectious disease epidemics

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Episodic sexual transmission of HIV revealed by molecular phylodynamics

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

High rates of forward transmission events after acute/early HIV-1 infection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Molecular epidemiological analysis of HIV in sexual networks in Uganda.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Bootstrap confidence levels for phylogenetic trees

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Confidence intervals of evolutionary distances between sequences and comparison with usual approaches including the bootstrap method

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250956

Tree robustness and clade significance

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25275430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Investigation of HIV-1 transmission events by phylogenetic methods: requirement for scientific rigour

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25275430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transmission networks of HIV-1 among men having sex with men in the Netherlands

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25275430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1089/AID.2014.0173

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275430 AND SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275430 AND SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

25275430

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25275430 AND SRC:MED&resulttype=core&format=json