Structural, electronic and energetic consequences of epigenetic cytosine modifications. (Q40761531)

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18 February 2020

title

Structural, electronic and energetic consequences of epigenetic cytosine modifications (English)

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2

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18 February 2020

author name string

P Cysewski

series ordinal

1

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18 February 2020

language of work or name

English

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publication date

1 July 2015

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Physical Chemistry Chemical Physics

18 February 2020

published in

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volume

17

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issue

29

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page(s)

19616-19624

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Epigenetic reprogramming in mammalian development

18 February 2020

cites work

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Functions of DNA methylation and hydroxymethylation in mammalian development

21 January 2018

1 reference

DNA methylation and mammalian epigenetics

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Epigenetic reprogramming in plant and animal development

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DNA Demethylation Dynamics

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The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential.

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Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

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Disruption of DNA-methylation-dependent long gene repression in Rett syndrome

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Epigenetics. Exceptional epigenetics in the brain.

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MeCP2 binds to non-CG methylated DNA as neurons mature, influencing transcription and the timing of onset for Rett syndrome

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Reactive species and DNA damage in chronic inflammation: reconciling chemical mechanisms and biological fates

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Examination of hypochlorous acid-induced damage to cytosine residues in a CpG dinucleotide in DNA.

21 January 2018

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Impact of base analogues within a CpG dinucleotide on the binding of DNA by the methyl-binding domain of MeCP2 and methylation by DNMT1

21 January 2018

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Flucytosine: a review of its pharmacology, clinical indications, pharmacokinetics, toxicity and drug interactions

21 January 2018

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A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu

21 January 2018

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The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors

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Unravelling the origin of intermolecular interactions using absolutely localized molecular orbitals

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The Nucleic Acid Database: new features and capabilities

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A standard reference frame for the description of nucleic acid base-pair geometry.

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

21 January 2018

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Environment influences on the aromatic character of nucleobases and amino acids

21 January 2018

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A post-SCF complete basis set study on the recognition patterns of uracil and cytosine by aromatic and pi-aromatic stacking interactions with amino acid residues

21 January 2018

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The post-SCF quantum chemistry characteristics of the guanine-guanine stacking B-DNA.

21 January 2018

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Non-additive interactions of nucleobases in model dinucleotide steps occurring in B-DNA crystals

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Structural and energetic properties of canonical and oxidized telomeric complexes studied by molecular dynamics simulations

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A survey of Hammett substituent constants and resonance and field parameters

21 January 2018

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Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

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π-Cooperativity effect on the base stacking interactions in DNA: is there a novel stabilization factor coupled with base pairing H-bonds?

21 January 2018

1 reference

Structural variability and the nature of intermolecular interactions in Watson-Crick B-DNA base pairs

21 January 2018

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How does modification of adenine by hydroxyl radical influence the stability and the nature of stacking interactions in adenine-cytosine complex?

21 January 2018

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Hydrogen bonds of RNA are stronger than those of DNA, but NMR monitors only presence of methyl substituent in uracil/thymine.

21 January 2018

1 reference

Hydrogen-hydrogen bonding in planar biphenyl, predicted by atoms-in-molecules theory, does not exist.

21 January 2018

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Hydrogen bonding without borders: an atoms-in-molecules perspective.

21 January 2018

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Analysis of charge transfer effects in molecular complexes based on absolutely localized molecular orbitals

21 January 2018

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The post-SCF quantum chemistry characteristics of inter- and intra-strand stacking interactions in d(CpG) and d(GpC) steps found in B-DNA, A-DNA and Z-DNA crystals

21 January 2018

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5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription.

21 January 2018

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Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs

21 January 2018

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21 January 2018

Identifiers

DOI

10.1039/C5CP02188J

1 reference

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18 February 2020

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