Multi-stage proofreading in DNA replication (Q40667232)

22 September 2017

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title

Multi-stage proofreading in DNA replication (English)

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22 September 2017

Beckman RA

1

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22 September 2017

Loeb LA

series ordinal

2

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22 September 2017

publication date

1 August 1993

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Quarterly Reviews of Biophysics

22 September 2017

published in

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22 September 2017

volume

26

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22 September 2017

issue

3

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22 September 2017

page(s)

225-331

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T5 DNA polymerase: structural--functional relationships to other DNA polymerases

22 September 2017

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Deoxynucleoside [1-thio]triphosphates prevent proofreading during in vitro DNA synthesis

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21 January 2018

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Construction and characterization of a bacteriophage T4 DNA polymerase deficient in 3'-->5' exonuclease activity

21 January 2018

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21 January 2018

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Isoleucyl-tRNA synthetase from baker's yeast and from Escherichia coli MRE 600. Discrimination of 20 amino acids in aminoacylation of tRNA(Ile)-C-C-A(3'NH2).

21 January 2018

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Isoleucyl-tRNA synthetase from bakers' yeast: multistep proofreading in discrimination between isoleucine and valine with modulated accuracy, a scheme for molecular recognition by energy dissipation.

21 January 2018

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Mechanisms of aminoacyl-tRNA synthetases: a critical consideration of recent results

21 January 2018

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Cocrystal structure of an editing complex of Klenow fragment with DNA

21 January 2018

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A domain of the Klenow fragment of Escherichia coli DNA polymerase I has polymerase but no exonuclease activity.

21 January 2018

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Enzyme hyperspecificity. Rejection of threonine by the valyl-tRNA synthetase by misacylation and hydrolytic editing

21 January 2018

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Establishing the misacylation/deacylation of the tRNA pathway for the editing mechanism of prokaryotic and eukaryotic valyl-tRNA synthetases

21 January 2018

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An editing mechanism for the methionyl-tRNA synthetase in the selection of amino acids in protein synthesis

21 January 2018

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Fidelity of replication of phage phi X174 DNA by DNA polymerase III holoenzyme: spontaneous mutation by misincorporation

21 January 2018

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Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase

21 January 2018

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NMR studies of conformations and interactions of substrates and ribonucleotide templates bound to the large fragment of DNA polymerase I.

21 January 2018

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Thermodynamic constraints on kinetic proofreading in biosynthetic pathways

21 January 2018

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Mechanism of DNA replication fidelity for three mutants of DNA polymerase I: Klenow fragment KF(exo ), KF(polA5), and KF(exo-).

21 January 2018

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Mutator strains of Escherichia coli, mutD and dnaQ, with defective exonucleolytic editing by DNA polymerase III holoenzyme

21 January 2018

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Mutants generated by the insertion of random oligonucleotides into the active site of the beta-lactamase gene

21 January 2018

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Comparative rates of spontaneous mutation

21 January 2018

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Kinetic partitioning between the exonuclease and polymerase sites in DNA error correction

21 January 2018

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A kinetic study of rat recombinant DNA polymerase beta: detection of a slow (hysteretic) transition in polymerase activity and inhibition by butylphenyl-deoxyguanosine triphosphate

21 January 2018

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Identification and amino acid sequence of the deoxynucleoside triphosphate binding site in Escherichia coli DNA polymerase I.

21 January 2018

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Detection of the catalytic activities of DNA polymerases and their associated exonucleases following SDS-polyacrylamide gel electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Resonance energy transfer measurements between substrate binding sites within the large (Klenow) fragment of Escherichia coli DNA polymerase I.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Fidelity of replication of bacteriophage X174 DNA in vitro and in Vivo

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme

21 January 2018

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DNA polymerase alpha and models for proofreading

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Fidelity of two retroviral reverse transcriptases during DNA-dependent DNA synthesis in vitro

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Ion effects on ligand-nucleic acid interactions

21 January 2018

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Association by Hydrogen Bonding of Mononucleotides in Aqueous Solution

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Genetic and crystallographic studies of the 3',5'-exonucleolytic site of DNA polymerase I.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Kinetic mechanism of DNA polymerase I(Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

DNA substrate structural requirements for the exonuclease and polymerase activities of procaryotic and phage DNA polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

A cryptic proofreading 3'----5' exonuclease associated with the polymerase subunit of the DNA polymerase-primase from Drosophila melanogaster

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Inactivation of DNA polymerase I (Klenow fragment) by adenosine 2',3'-epoxide 5'-triphosphate: evidence for the formation of a tight-binding inhibitor

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Selective inhibition of the 3' to 5' exonuclease activity associated with DNA polymerases: a mechanism of mutagenesis

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Elementary steps in the DNA polymerase I reaction pathway

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Phenylalanyl-tRNA Synthetase and Isoleucyl-tRNA Phe : A Possible Verification Mechanism for Aminoacyl-tRNA

21 January 2018

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Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells.

21 January 2018

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An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics

21 January 2018

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Fluoride inhibition of yeast enolase. 2. Structural and kinetic properties of the ligand complexes determined by nuclear relaxation rate studies.

21 January 2018

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Mutagenesis during in vitro DNA synthesis

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

A kinetic recognition process for tRNA at the ribosome

21 January 2018

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Helical complexes of polyriboinosinic acid with copolymers of polyribocytidylic acid containing inosine, adenosine and uridine residues

21 January 2018

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Studies on the biochemical basis of spontaneous mutation. II. The incorporation of a base and its analogue into DNA by wild-type, mutator and antimutator DNA polymerases

21 January 2018

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A new approach to DNA polymerase kinetics

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Complementary base pairing and the origin of substitution mutations

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Detection and characterization of mammalian DNA polymerase beta mutants by functional complementation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

On the fidelity of DNA replication: manganese mutagenesis in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Influence of local nucleotide sequence on substitution of 2-aminopurine for adenine during deoxyribonucleic acid synthesis in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Next-nucleotide effects in mutations driven by DNA precursor pool imbalances at the aprt locus of Chinese hamster ovary cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Comparison of nucleotide interactions in water, proteins, and vacuum: model for DNA polymerase fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Comparison between DNA melting thermodynamics and DNA polymerase fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

NMR identification of protein surfaces using paramagnetic probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Extension of mismatched 3' termini of DNA is a major determinant of the infidelity of human immunodeficiency virus type 1 reverse transcriptase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Mnemonic aspects of Escherichia coli DNA polymerase I. Interaction with one template influences the next interaction with another template.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

A memory effect in DNA replication

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Kinetic amplification of enzyme discrimination

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Thymidine kinase mutants obtained by random sequence selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Mechanism of selective inhibition of 3' to 5' exonuclease activity of Escherichia coli DNA polymerase I by nucleoside 5'-monophosphates

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Editing mechanisms in aminoacylation of tRNA:ATP consumption and the binding of aminoacyl-tRNA by elongation factor Tu

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

NMR studies of the active site of DNA polymerase I and of a 50-residue peptide fragment of the enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Rate-limiting steps in the DNA polymerase I reaction pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Mechanism of DNA polymerase I: exonuclease/polymerase activity switch and DNA sequence dependence of pyrophosphorolysis and misincorporation reactions

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Kinetic mechanism of DNA polymerase I (Klenow).

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Kinetic mechanism whereby DNA polymerase I (Klenow) replicates DNA with high fidelity

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Proximity of the nucleoside monophosphate and triphosphate binding sites on deoxyribonucleic acid polymerase

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Tinkering with enzymes: what are we learning?

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

polA6, a mutation affecting the DNA binding capacity of DNA polymerase I

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Mechanism of the idling-turnover reaction of the large (Klenow) fragment of Escherichia coli DNA polymerase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Mechanism of enzyme action.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

The kinetics and processivity of nucleic acid polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Proofreading by DNA polymerase III of Escherichia coli depends on cooperative interaction of the polymerase and exonuclease subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Methyl-directed repair of DNA base-pair mismatches in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

Reversibility of nucleotide incorporation by Escherichia coli RNA polymerase, and its effect on fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583500002869

The energy relay: a proofreading scheme based on dynamic cooperativity and lacking all characteristic symptoms of kinetic proofreading in DNA replication and protein synthesis

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

THE FREQUENCY OF ERRORS IN PROTEIN BIOSYNTHESIS

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Probing DNA Replication Mechanisms with the T4 Bacteriophage In Vitro System

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Further studies on calf thymus DNA polymerase delta purified to homogeneity by a new procedure

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Evidence for an intermediate in DNA synthesis involving pyrophosphate exchange. A possible role in fidelity.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583500002869

Interaction of DNA with the Klenow fragment of DNA polymerase I studied by time-resolved fluorescence spectroscopy

21 January 2018

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T4 DNA polymerase has a lower apparent Km for deoxynucleoside triphosphates complementary rather than noncomplementary to the template

21 January 2018

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Molecular orbital (CNDO/2 and MINDO) calculations on protonated deoxyribonucleic acid bases. The effects of base protonation on intermolecular interactions

21 January 2018

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7 January 2021

DNA polymerase .delta.: one polypeptide, two activities

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7 January 2021

Proofreading systems of multiple stages for improved accuracy of biological discrimination

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7 January 2021

Isoleucyl-tRNA synthetase from baker's yeast and from Escherichia coli MRE 600. Discrimination of 20 amino acids in aminoacylation of tRNA(Ile)-C-C-A

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https://api.crossref.org/works/10.1017/S0033583500002869

7 January 2021

Do DNA polymerases delta and alpha act coordinately as leading and lagging strand replicases?

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https://api.crossref.org/works/10.1017/S0033583500002869

7 January 2021

The specificity of enzymic reactions. Aminoacyl-soluble RNA ligases

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https://api.crossref.org/works/10.1017/S0033583500002869

7 January 2021

Contribution of 3′ → 5′ exonuclease activity of DNA polymerase III holoenzyme from Escherichia coli to specificity

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7 January 2021

The Origin of Genetic Information

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7 January 2021

Enzymatic determinants of DNA polymerase accuracy. Theory of coliphage T4 polymerase mechanisms

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https://api.crossref.org/works/10.1017/S0033583500002869

7 January 2021

Nuclear Overhauser effect studies of the conformations and binding site environments of deoxynucleoside triphosphate substrates bound to DNA polymerase I and its large fragment

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7 January 2021

Kinetic characterization of the polymerase and exonuclease activities of the gene 43 protein of bacteriophage T4

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https://api.crossref.org/works/10.1017/S0033583500002869

7 January 2021

Genetic mapping and DNA sequence analysis of mutations in the polA gene of Escherichia coli

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7 January 2021

A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerases

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7 January 2021

Electrostatic field of the large fragment of Escherichia coli DNA polymerase I

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7 January 2021

Fidelity of mammalian DNA polymerases

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7 January 2021

Efficient catalysis of polycytidylic acid-directed oligoguanylate formation by Pb2

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7 January 2021

Unambiguous determination of the stereochemistry of nucleotidyl transfer catalyzed by DNA polymerase I from Escherichia coli

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7 January 2021

Amino acid changes coded by bacteriophage T4 DNA polymerase mutator mutants. Relating structure to function

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7 January 2021

Tyrosyl-tRNA synthetase from baker's yeast. Order of substrate addition, discrimination of 20 amino acids in aminoacylation of tRNATyr-C-C-A and tRNATyr-C-C-A(3'NH2)

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7 January 2021

DNA binding domain of Escherichia coli DNA polymerase I: identification of arginine-841 as an essential residue

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7 January 2021

Photoaffinity labeling of the thymidine triphosphate binding domain in Escherichia coli DNA polymerase I: identification of histidine-881 as the site of cross-linking.

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7 January 2021

Fidelity of mammalian DNA replication and replicative DNA polymerases

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7 January 2021

10.1017/S0033583500002869

Identifiers

DOI

1 reference

22 September 2017

1 reference