Calibrating a coalescent simulation of human genome sequence variation (Q40510086)

21 September 2017

Calibrating a coalescent simulation of human genome sequence variation (English)

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21 September 2017

6

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21 September 2017

3

Stacey Gabriel

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21 September 2017

5

Mark J Daly

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21 September 2017

1

Stephen F Schaffner

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21 September 2017

4

David Reich

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21 September 2017

Catherine Foo

2

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PMC publication ID

1310645

21 September 2017

language of work or name

English

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publication date

1 November 2005

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21 September 2017

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21 September 2017

15

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21 September 2017

11

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21 September 2017

1576-1583

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Population history and natural selection shape patterns of genetic variation in 132 genes

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

The fine-scale structure of recombination rate variation in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Population-genetic basis of haplotype blocks in the 5q31 region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Assessing the performance of the haplotype block model of linkage disequilibrium

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Haplotype blocks and linkage disequilibrium in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

A coalescent model of recombination hotspots

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Detecting recent positive selection in the human genome from haplotype structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

High-resolution patterns of meiotic recombination across the human major histocompatibility complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Testing models of selection and demography in Drosophila simulans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Human genome sequence variation and the influence of gene history, mutation and recombination

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

A high-resolution recombination map of the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

The structure of haplotype blocks in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Patterns of linkage disequilibrium in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Generating samples under a Wright-Fisher neutral model of genetic variation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

The discovery of single-nucleotide polymorphisms--and inferences about human demographic history

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Linkage disequilibrium in humans: models and data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Linkage disequilibrium in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

A DNA polymorphism discovery resource for research on human genetic variation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Selection versus demography: a multilocus investigation of the domestication process in maize

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310645

Recombination hotspots rather than population history dominate linkage disequilibrium in the MHC class II region

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251467

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for substantial fine-scale variation in recombination rates across the human genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251467

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.3709305

1 reference

21 September 2017

1 reference

PMC publication ID

1310645

21 September 2017

PubMed publication ID

16251467

1 reference

PMC publication ID

1310645