Multiscale methods for protein folding simulations (Q39877524)

15 September 2017

title

Multiscale methods for protein folding simulations (English)

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15 September 2017

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Naoto Hori

3

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Wenfei Li

object named as

Wenfei Li

1

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author name string

Hiroaki Yoshii

2

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15 September 2017

Tomoshi Kameda

4

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15 September 2017

Shoji Takada

5

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15 September 2017

publication date

29 April 2010

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15 September 2017

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15 September 2017

volume

52

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15 September 2017

issue

1

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15 September 2017

page(s)

106-114

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The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain

15 September 2017

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1 reference

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Protein folding: the free energy surface

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From Levinthal to pathways to funnels

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

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The fundamentals of protein folding: bringing together theory and experiment

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

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Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

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Trp-cage: Folding free energy landscape in explicit water

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Mapping atomistic simulations to mesoscopic models: a systematic coarse-graining procedure for vinyl polymer chains

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Systematic multiscale simulation of membrane protein systems

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Efficient sampling of protein structures by model hopping.

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Folding pathway of the b1 domain of protein G explored by multiscale modeling

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7 January 2021

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7 January 2021

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Folding energy landscape and network dynamics of small globular proteins

7 January 2021

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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

7 January 2021

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Shaping up the protein folding funnel by local interaction: lesson from a structure prediction study

7 January 2021

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A graph-theory algorithm for rapid protein side-chain prediction

7 January 2021

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase

7 January 2021

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Backtracking on the folding landscape of the beta-trefoil protein interleukin-1beta?

7 January 2021

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Mechanical control of the directional stepping dynamics of the kinesin motor

7 January 2021

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Protein folding simulations: from coarse-grained model to all-atom model.

7 January 2021

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Folding with downhill behavior and low cooperativity of proteins

7 January 2021

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Paddling mechanism for the substrate translocation by AAA motor revealed by multiscale molecular simulations

7 January 2021

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

7 January 2021

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How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: molecular simulations

7 January 2021

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Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

7 January 2021

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Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics

7 January 2021

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Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles

7 January 2021

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Anisotropic network model: systematic evaluation and a new web interface

7 January 2021

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iGNM: a database of protein functional motions based on Gaussian Network Model.

7 January 2021

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Smart resolution replica exchange: an efficient algorithm for exploring complex energy landscapes

7 January 2021

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Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates

7 January 2021

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Replica-exchange molecular dynamics method for protein folding

7 January 2021

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Crystal structure of a ten-amino acid protein

7 January 2021

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10.1016/J.YMETH.2010.04.014

7 January 2021

Identifiers

DOI

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release_57b553oqozgadjzpd2pq5a4tym

15 September 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/57b553oqozgadjzpd2pq5a4tym

mapped directly with Wikidata item

24 November 2022

based on heuristic

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