NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways (Q39784640)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18524799 AND SRC:MED&resulttype=core&format=json

8 January 2020

title

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways (English)

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8 January 2020

8

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8 January 2020

Karoline Faust

2

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8 January 2020

Gipsi Lima-Mendez

3

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8 January 2020

author name string

Sylvain Brohée

1

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8 January 2020

Olivier Sand

4

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8 January 2020

Rekin's Janky

5

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8 January 2020

Gilles Vanderstocken

6

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8 January 2020

Yves Deville

7

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8 January 2020

language of work or name

English

0 references

publication date

4 June 2008

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8 January 2020

published in

Nucleic Acids Research

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8 January 2020

volume

36

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8 January 2020

issue

Web Server issue

1 reference

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8 January 2020

page(s)

W444-51

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GraphCrunch: a tool for large network analyses

8 January 2020

cites work

1 reference

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22 September 2017

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The BioGRID Interaction Database: 2008 update

22 September 2017

1 reference

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The Gene Ontology project in 2008

22 September 2017

1 reference

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Graphs in molecular biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

22 September 2017

1 reference

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Network-based prediction of protein function

22 September 2017

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STRING 7--recent developments in the integration and prediction of protein interactions

22 September 2017

1 reference

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Evaluation of clustering algorithms for protein-protein interaction networks

22 September 2017

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

22 September 2017

1 reference

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Proteome survey reveals modularity of the yeast cell machinery

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Metabolic PathFinding: inferring relevant pathways in biochemical networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Genomic analysis of regulatory network dynamics reveals large topological changes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Structure and evolution of transcriptional regulatory networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

MIPS: analysis and annotation of proteins from whole genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Cytoscape: a software environment for integrated models of biomolecular interaction networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

An overview of data models for the analysis of biochemical pathways

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Protein complexes and functional modules in molecular networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Predicting protein function from protein/protein interaction data: a probabilistic approach

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

How reliable are experimental protein-protein interaction data?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Graph-based analysis of metabolic networks.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Comparative assessment of large-scale data sets of protein-protein interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

An efficient algorithm for large-scale detection of protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Lethality and centrality in protein networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

A comprehensive two-hybrid analysis to explore the yeast protein interactome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

The large-scale organization of metabolic networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

PathFinder: mining signal transduction pathway segments from protein-protein interaction networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Knowledge representation of signal transduction pathways

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Inferring meaningful pathways in weighted metabolic networks

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Reticulate representation of evolutionary and functional relationships between phage genomes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Efficient algorithms for detecting signaling pathways in protein interaction networks

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Protein complex prediction via cost-based clustering

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Functional and topological characterization of protein interaction networks

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Detection of functional modules from protein interaction networks.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Hierarchical analysis of dependency in metabolic networks

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

Effect of sampling on topology predictions of protein-protein interaction networks

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447721

GeneMCL in microarray analysis

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18524799

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN336

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18524799 AND SRC:MED&resulttype=core&format=json

journals/nar/BroheeFLSJVDH08

8 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18524799 AND SRC:MED&resulttype=core&format=json

8 January 2020

PubMed publication ID

18524799

1 reference