What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition? (Q39771675)

14 September 2017

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition? (English)

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14 September 2017

3

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14 September 2017

Anel Mahmutovic

1

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14 September 2017

Otto G Berg

series ordinal

2

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14 September 2017

language of work or name

English

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publication date

16 March 2015

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14 September 2017

Nucleic Acids Research

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14 September 2017

43

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14 September 2017

7

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14 September 2017

3454-3464

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Creative Commons Attribution 4.0 International

14 September 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Obstacles may facilitate and direct DNA search by proteins

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22 September 2017

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DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail

22 September 2017

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Probing transcription factor dynamics at the single-molecule level in a living cell

22 September 2017

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Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

22 September 2017

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Sliding and intermolecular transfer of the lac repressor: kinetic perturbation of a reaction intermediate by a distant DNA sequence

22 September 2017

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22 September 2017

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Comparison of protein binding to DNA in vivo and in vitro: defining an effective intracellular target.

22 September 2017

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Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker

25 September 2017

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

17 June 2018

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17 June 2018

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17 June 2018

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17 June 2018

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Facilitated diffusion buffers noise in gene expression

17 June 2018

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Protein-DNA electrostatics: toward a new paradigm for protein sliding

20 August 2018

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20 August 2018

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Speed-selectivity paradox in the protein search for targets on DNA: is it real or not?

20 August 2018

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The lac repressor displays facilitated diffusion in living cells.

20 August 2018

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Insights into the sliding movement of the lac repressor nonspecifically bound to DNA.

20 August 2018

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Quantifying hopping and jumping in facilitated diffusion of DNA-binding proteins.

20 August 2018

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Facilitated diffusion of DNA-binding proteins: Simulation of large systems

20 August 2018

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Interaction of Fis protein with DNA: bending and specificity of binding.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402528

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

20 August 2018

1 reference

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Facilitated Diffusion of Proteins on Chromatin

20 August 2018

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Crossref

https://api.crossref.org/works/10.1093/NAR/GKV207

Comparison of kinetic and dynamical models of DNA-protein interaction and facilitated diffusion

21 January 2018

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12 December 2020

Salt dependence of the kinetics of the lac repressor-operator interaction: role of nonoperator deoxyribonucleic acid in the association reaction

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12 December 2020

Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA

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12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

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12 December 2020

Facilitated diffusion on confined DNA

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12 December 2020

One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements

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12 December 2020

How a protein searches for its specific site on DNA: the role of intersegment transfer

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12 December 2020

Facilitated search of proteins on DNA: correlations are important

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12 December 2020

Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tails

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12 December 2020

Protein sliding along DNA: dynamics and structural characterization

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKV207

1 reference

14 September 2017

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14 September 2017

PubMed publication ID

25779051

1 reference