Snowball: strain aware gene assembly of metagenomes (Q39429340)

11 September 2017

title

Snowball: strain aware gene assembly of metagenomes (English)

1 reference

11 September 2017

I Gregor

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

13 June 2020

language of work or name

English

0 references

publication date

1 September 2016

1 reference

11 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

13 June 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

13 June 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

i649-i657

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

13 June 2020

copyright license

start time

10 November 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Functional overlap of the Arabidopsis leaf and root microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Ray Meta: scalable de novo metagenome assembly and profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Accelerated Profile HMM Searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Pfam: the protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

ART: a next-generation sequencing read simulator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Assembly complexity of prokaryotic genomes using short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

A bioinformatician's guide to metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Metagenomics: genomic analysis of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Efficient de novo assembly of large genomes using compressed data structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Viral quasispecies assembly via maximal clique enumeration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

Reconstructing 16S rRNA genes in metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTW426

10.1093/BIOINFORMATICS/BTW426

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27587685 AND SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

journals/bioinformatics/GregorSM16

1 reference

DBLP Dataset 2021-01-02

release_45vepounczgdveblfhemp6io6i

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/45vepounczgdveblfhemp6io6i

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference