COPASI and its applications in biotechnology (Q39401329)

11 September 2017

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title

COPASI and its applications in biotechnology (English)

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11 September 2017

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2

Stefan Hoops

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11 September 2017

7

Sven Sahle

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11 September 2017

Jürgen Pahle

6

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Pedro Mendes

object named as

Pedro Mendes

5

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author name string

Frank T Bergmann

1

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11 September 2017

Brian Klahn

3

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11 September 2017

Ursula Kummer

4

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11 September 2017

publication date

24 June 2017

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11 September 2017

published in

Journal of Biotechnology

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The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core

11 September 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Kinetics and model development for enzymatic synthesis of fructo-oligosaccharides using fructosyltransferase

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Identification of novel metabolic interactions controlling carbon flux from xylose to ethanol in natural and recombinant yeasts

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Easy parameter identifiability analysis with COPASI.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Biochemical fluctuations, optimisation and the linear noise approximation

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Applications and trends in systems biology in biochemistry

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Enzyme kinetics and computational modeling for systems biology.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Modelling nitrogen assimilation of Escherichia coli at low ammonium concentration

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Accessible methods for the dynamic time-scale decomposition of biochemical systems

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Computational modeling of biochemical networks using COPASI

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Biochemical simulations: stochastic, approximate stochastic and hybrid approaches.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Structural and functional analysis of cellular networks with CellNetAnalyzer

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

COPASI--a COmplex PAthway SImulator

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Efficient step size selection for the tau-leaping simulation method

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Modelling of simple and complex calcium oscillations. From single-cell responses to intercellular signalling.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Switching from simple to complex oscillations in calcium signaling

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

Metabolic control theory: a structural approach.

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

On the Divalent Metal Ion Dependence of DNA Cleavage by Restriction Endonucleases of the EcoRI Family

1 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623632

The reaction of catalase and cyanide

2 December 2018

1 reference

12 December 2020

Self-Oscillations in Glycolysis. 1. A Simple Kinetic Model

1 reference

12 December 2020

Design of hyperchaotic flows

1 reference

12 December 2020

The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core

1 reference

12 December 2020

10.1016/J.JBIOTEC.2017.06.1200

Identifiers

DOI

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11 September 2017

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