Fast prediction of RNA-RNA interaction (Q39270386)

10 September 2017

Fast prediction of RNA-RNA interaction (English)

1 reference

10 September 2017

2

Rolf Backofen

1 reference

10 September 2017

Raheleh Salari

1

1 reference

10 September 2017

S Cenk Sahinalp

series ordinal

3

1 reference

10 September 2017

4 January 2010

1 reference

Algorithms for Molecular Biology

10 September 2017

1 reference

10 September 2017

5

1 reference

10 September 2017

5

1 reference

A partition function algorithm for interacting nucleic acid strands

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

UNAFold: software for nucleic acid folding and hybridization

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Partition function and base pairing probabilities of RNA heterodimers

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Target prediction for small, noncoding RNAs in bacteria

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Thermodynamics of RNA-RNA binding

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Fast and effective prediction of microRNA/target duplexes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Prediction of hybridization and melting for double-stranded nucleic acids

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

RNA loop-loop interactions as dynamic functional motifs.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

RNAplex: a fast tool for RNA-RNA interaction search

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

RNA-RNA interaction prediction and antisense RNA target search

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: a quantitative model

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

IRIS: intermolecular RNA interaction search.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Secondary structure prediction of interacting RNA molecules

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828455

Antisense RNAs everywhere?

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20047661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-5-5

1 reference

journals/almob/SalariBS10

10 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1748-7188-5-5

1 reference

10 September 2017

PubMed publication ID

20047661

1 reference