Conflict Resolution in the Genome: How Transcription and Replication Make It Work (Q39027290)

http://europepmc.org/abstract/PMC/5141617

20 December 2017

review article

1 reference

title

Conflict Resolution in the Genome: How Transcription and Replication Make It Work (English)

1 reference

http://europepmc.org/abstract/PMC/5141617

20 December 2017

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Karlene A Cimprich

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

language of work or name

English

0 references

publication date

1 December 2016

1 reference

http://europepmc.org/abstract/PMC/5141617

20 December 2017

published in

Cell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

volume

167

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

issue

6

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

1455-1467

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage

6 June 2020

cites work

1 reference

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Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals

17 June 2018

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The nature of mutations induced by replication–transcription collisions.

17 June 2018

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Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells.

17 June 2018

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Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress

17 June 2018

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Replication landscape of the human genome

17 June 2018

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17 June 2018

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The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription

17 June 2018

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The Fanconi Anemia Pathway Protects Genome Integrity from R-loops

17 June 2018

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R loops: new modulators of genome dynamics and function

17 June 2018

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The B. subtilis Accessory Helicase PcrA Facilitates DNA Replication through Transcription Units

17 June 2018

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Breaking bad: R-loops and genome integrity

17 June 2018

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Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.

17 June 2018

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Phosphoproteomics reveals distinct modes of Mec1/ATR signaling during DNA replication

17 June 2018

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Zygotic genome activation triggers the DNA replication checkpoint at the midblastula transition

17 June 2018

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Exit from dormancy provokes DNA-damage-induced attrition in haematopoietic stem cells.

17 June 2018

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BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair

17 June 2018

1 reference

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Dynamic loading and redistribution of the Mcm2-7 helicase complex through the cell cycle

17 June 2018

1 reference

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Temporal separation of replication and transcription during S-phase progression

17 June 2018

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Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability

17 June 2018

1 reference

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Dicer promotes transcription termination at sites of replication stress to maintain genome stability

17 June 2018

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R-loops induce repressive chromatin marks over mammalian gene terminators

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Updating the mechanisms of common fragile site instability: how to reconcile the different views?

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Out of balance: R-loops in human disease

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Transcription-associated R-loop formation across the human FMR1 CGG-repeat region

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip

17 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.

17 June 2018

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UvrD facilitates DNA repair by pulling RNA polymerase backwards

17 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

R loops are linked to histone H3 S10 phosphorylation and chromatin condensation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

PrimPol, an archaic primase/polymerase operating in human cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

The conserved C-terminus of the PcrA/UvrD helicase interacts directly with RNA polymerase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Proteasome-mediated processing of Def1, a critical step in the cellular response to transcription stress

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes.

17 June 2018

1 reference

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Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs

17 June 2018

1 reference

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R-loops in bacterial transcription: their causes and consequences

17 June 2018

1 reference

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Pif1 family helicases suppress genome instability at G-quadruplex motifs

17 June 2018

1 reference

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Quantitative, genome-wide analysis of eukaryotic replication initiation and termination

17 June 2018

1 reference

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Transcription-replication encounters, consequences and genomic instability

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Accelerated gene evolution through replication-transcription conflicts

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Identification of early replicating fragile sites that contribute to genome instability

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Coordinated control of replication and transcription by a SAPK protects genomic integrity.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Senataxin, defective in the neurodegenerative disorder ataxia with oculomotor apraxia 2, lies at the interface of transcription and the DNA damage response

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Transcription-coupled DNA repair in prokaryotes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Replication-transcription conflicts in bacteria.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

17 June 2018

1 reference

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DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase.

17 June 2018

1 reference

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R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants

17 June 2018

1 reference

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RNase H and Multiple RNA Biogenesis Factors Cooperate to Prevent RNA:DNA Hybrids from Generating Genome Instability

17 June 2018

1 reference

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Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes

17 June 2018

1 reference

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BRCA1 and BRCA2: different roles in a common pathway of genome protection

17 June 2018

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R-loop-mediated genomic instability is caused by impairment of replication fork progression

17 June 2018

1 reference

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Linking RNA polymerase backtracking to genome instability in E. coli

17 June 2018

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DNA replication initiation patterns and spatial dynamics of the human ribosomal RNA gene loci

17 June 2018

1 reference

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The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.

17 June 2018

1 reference

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Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Bacterial transcription terminators: the RNA 3'-end chronicles

17 June 2018

1 reference

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Co-directional replication-transcription conflicts lead to replication restart

17 June 2018

1 reference

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Structural basis of RNA polymerase II backtracking, arrest and reactivation

17 June 2018

1 reference

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Yeast Sen1 helicase protects the genome from transcription-associated instability.

17 June 2018

1 reference

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Transcription termination maintains chromosome integrity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

The DNA Damage Response: Making It Safe to Play with Knives

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome.

17 June 2018

1 reference

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Co-orientation of replication and transcription preserves genome integrity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Rep provides a second motor at the replisome to promote duplication of protein-bound DNA.

17 June 2018

1 reference

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Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

17 June 2018

1 reference

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The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants

17 June 2018

1 reference

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ATR: an essential regulator of genome integrity

17 June 2018

1 reference

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Transcription-associated recombination is dependent on replication in Mammalian cells

17 June 2018

1 reference

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Replication fork barriers: pausing for a break or stalling for time?

17 June 2018

1 reference

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Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

17 June 2018

1 reference

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Transcription regulatory elements are punctuation marks for DNA replication

17 June 2018

1 reference

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Mechanisms of transcription-replication collisions in bacteria

17 June 2018

1 reference

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DNA/RNA helicase gene mutations in a form of juvenile amyotrophic lateral sclerosis (ALS4)

17 June 2018

1 reference

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Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase

17 June 2018

1 reference

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Ultraviolet light-induced apoptosis is associated with S-phase in primary human fibroblasts.

17 June 2018

1 reference

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ATR Regulates Fragile Site Stability

17 June 2018

1 reference

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Segregation of transcription and replication sites into higher order domains

17 June 2018

1 reference

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Transcriptional fidelity and proofreading by RNA polymerase II.

17 June 2018

1 reference

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Organization of replication of ribosomal DNA in Saccharomyces cerevisiae

17 June 2018

1 reference

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Consequences of replication fork movement through transcription units in vivo

17 June 2018

1 reference

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A Mechanism for Somatic Brain Mosaicism

17 June 2018

1 reference

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Bacterial global regulators DksA/ppGpp increase fidelity of transcription

21 August 2018

1 reference

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RNA polymerase II contributes to preventing transcription-mediated replication fork stalls

21 August 2018

1 reference

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BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.

21 August 2018

1 reference

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RNA polymerase backtracking in gene regulation and genome instability

21 August 2018

1 reference

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Replication stress checkpoint signaling controls tRNA gene transcription.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

The replisome uses mRNA as a primer after colliding with RNA polymerase

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Impairment of replication fork progression mediates RNA polII transcription-associated recombination

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141617

Direct restart of a replication fork stalled by a head-on RNA polymerase

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27912056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2016.09.053

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27912056 AND SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

27912056

1 reference