Histone depletion facilitates chromatin loops on the kilobasepair scale. (Q38973166)

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15 January 2020

title

Histone depletion facilitates chromatin loops on the kilobasepair scale (English)

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15 January 2020

3

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15 January 2020

author name string

Philipp M Diesinger

series ordinal

1

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15 January 2020

Susanne Kunkel

series ordinal

2

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15 January 2020

Dieter W Heermann

series ordinal

4

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15 January 2020

language of work or name

English

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publication date

1 November 2010

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15 January 2020

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15 January 2020

volume

99

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15 January 2020

issue

9

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15 January 2020

page(s)

2995-3001

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Spatially confined folding of chromatin in the interphase nucleus.

15 January 2020

cites work

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Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

9 September 2017

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An evaluation of 3C-based methods to capture DNA interactions

9 September 2017

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9 September 2017

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Direct observation of DNA distortion by the RSC complex

9 September 2017

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Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation

9 September 2017

1 reference

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X-ray structure of a tetranucleosome and its implications for the chromatin fibre

9 September 2017

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Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3' boundary sequence spanning 46 kilobases

9 September 2017

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Structure and dynamic properties of nucleosome core particles

9 September 2017

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Nucleosome arrays reveal the two-start organization of the chromatin fiber

9 September 2017

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Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.

9 September 2017

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A closer look at long-range chromosomal interactions

9 September 2017

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The structure of DNA in the nucleosome core

9 September 2017

1 reference

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Looping and interaction between hypersensitive sites in the active beta-globin locus

9 September 2017

1 reference

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Computer simulation of the 30-nanometer chromatin fiber.

9 September 2017

1 reference

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Translating the Histone Code

9 September 2017

1 reference

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The positioning and dynamics of origins of replication in the budding yeast nucleus.

9 September 2017

1 reference

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DNA folding: structural and mechanical properties of the two-angle model for chromatin

9 September 2017

1 reference

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Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

9 September 2017

1 reference

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Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

9 September 2017

1 reference

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Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2968631

What determines the folding of the chromatin fiber?

9 September 2017

1 reference

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The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae

9 September 2017

1 reference

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Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy

9 September 2017

1 reference

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A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2968631

Evidence for the organization of chromatin in megabase pair-sized loops arranged along a random walk path in the human G0/G1 interphase nucleus

9 September 2017

1 reference

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A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells

9 September 2017

1 reference

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Solenoidal model for superstructure in chromatin

9 September 2017

1 reference

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Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

9 September 2017

1 reference

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Nucleosome shape dictates chromatin fiber structure

9 September 2017

1 reference

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Chromatin higher order structure: chasing a mirage?

14 September 2017

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The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin

14 September 2017

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Action at a distance: DNA-looping and initiation of transcription

25 September 2017

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GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion

25 September 2017

1 reference

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Depletion effects massively change chromatin properties and influence genome folding

17 June 2018

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High flexibility of DNA on short length scales probed by atomic force microscopy.

21 August 2018

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Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation

21 August 2018

1 reference

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The three 'C' s of chromosome conformation capture: controls, controls, controls.

21 August 2018

1 reference

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Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

21 August 2018

1 reference

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Spontaneous sharp bending of double-stranded DNA.

21 August 2018

1 reference

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The beta-globin nuclear compartment in development and erythroid differentiation

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2968631

Monte Carlo simulation of chromatin stretching

21 August 2018

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12 December 2020

Two-angle model and phase diagram for chromatin

1 reference

12 December 2020

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

1 reference

12 December 2020

Structure of the 300A chromatin filament: X-ray diffraction from oriented samples

1 reference

12 December 2020

Physicochemical studies of the folding of the 100 A nucleosome filament into the 300 A filament. Cation dependence

1 reference

12 December 2020

10.1016/J.BPJ.2010.08.039

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21044597 AND SRC:MED&resulttype=core&format=json

15 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21044597 AND SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

21044597

1 reference