Use of Molecular Dynamics for the Refinement of an Electrostatic Model for the In Silico Design of a Polymer Antidote for the Anticoagulant Fondaparinux. (Q38840652)

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scientific article published on 24 July 2013

Language	Label	Description	Also known as
English	Use of Molecular Dynamics for the Refinement of an Electrostatic Model for the In Silico Design of a Polymer Antidote for the Anticoagulant Fondaparinux.	scientific article published on 24 July 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

Use of Molecular Dynamics for the Refinement of an Electrostatic Model for the In Silico Design of a Polymer Antidote for the Anticoagulant Fondaparinux (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

molecular design

0 references

anticoagulation

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

Jayachandran N Kizhakkedathu

4

object named as

Jayachandran N Kizhakkedathu

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Europe PubMed Central

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30 March 2020

author name string

Ezra Kwok

2

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30 March 2020

Bhushan Gopaluni

3

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30 March 2020

publication date

24 July 2013

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30 March 2020

Journal of medical engineering

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

2013

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

487387

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

copyright license

Creative Commons Attribution 3.0 Unported

24 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

Fundamental aspects of protein-protein association kinetics

1 reference

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9 September 2017

Conformational structure of some trimeric and pentameric structural units of heparin

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9 September 2017

The anticoagulated patient: strategies for effective blood loss management

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9 September 2017

Beyond heparin and warfarin: the new generation of anticoagulants

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9 September 2017

Anticoagulants and their reversal

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

9 September 2017

Structural biology and drug discovery

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9 September 2017

From heparins to factor Xa inhibitors and beyond

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9 September 2017

Calculating potentials of mean force from steered molecular dynamics simulations

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

9 September 2017

Unfractionated heparin and other antithrombin mediated anticoagulants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

9 September 2017

Gramicidin A channel as a test ground for molecular dynamics force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

9 September 2017

Heparin-protein interactions

1 reference

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9 September 2017

Structure-function relations of antithrombin III-heparin interactions as assessed by biophysical and biological assays and molecular modeling of peptide-pentasaccharide-docked complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

9 September 2017

Diffusion-controlled macromolecular interactions

1 reference

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14 September 2017

A chemically-modified inactive antithrombin as a potent antagonist of fondaparinux and heparin anticoagulant activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4782625

22 August 2018

Parallel stacking of caffeine with riboflavin in aqueous solutions: the potential mechanism for hydrotropic solubilization of riboflavin

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22 August 2018

Umbrella integration in two or more reaction coordinates

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22 August 2018

Dynamics and thermodynamics of water in PAMAM dendrimers at subnanosecond time scales.

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22 August 2018

Complexes of poly(ethylene glycol)-based cationic random copolymer and calf thymus DNA: a complete biophysical characterization

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22 August 2018

High-affinity multivalent DNA binding by using low-molecular-weight dendrons

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22 August 2018

Rational design of faster associating and tighter binding protein complexes.

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22 August 2018

Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar.

1 reference

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22 August 2018

COMPASS: An ab Initio Force-Field Optimized for Condensed-Phase ApplicationsOverview with Details on Alkane and Benzene Compounds

1 reference

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21 January 2018

Conformational Behavior of Basic Monomeric Building Units of Glycosaminoglycans: Isolated Systems and Solvent Effect

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21 January 2018

Development of a recombinant antithrombin variant as a potent antidote to fondaparinux and other heparin derivatives

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Free energy simulations of single and double ion occupancy in gramicidin A

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid, electrostatically assisted association of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New insights into the mechanism of protein-protein association

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Disparate ionic-strength dependencies of on and off rates in protein-protein association

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New anticoagulants

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comparison of methods to compute the potential of mean force

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Emerging anticoagulants for the treatment of venous thromboembolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/27006916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1155/2013/487387

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27006916 AND SRC:MED&resulttype=core&format=json

30 March 2020

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