CRISPRcloud: A secure cloud-based pipeline for CRISPR pooled screen deconvolution (Q38765521)

28541456

6 September 2017

title

CRISPRcloud: A secure cloud-based pipeline for CRISPR pooled screen deconvolution (English)

1 reference

6 September 2017

0 references

1 reference

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

Maxime Rousseaux

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

Huda Zoghbi

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

Zhandong Liu

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Seon Young Kim

2

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11 June 2020

language of work or name

English

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publication date

24 May 2017

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6 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

volume

33

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11 June 2020

issue

18

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11 June 2020

page(s)

2963-2965

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MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome

11 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

CRISPRtools: a flexible computational platform for performing CRISPR/Cas9 experiments in the mouse.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Design, execution, and analysis of pooled in vitro CRISPR/Cas9 screens

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Current strategies for mutation detection in phenotype-driven screens utilising next generation sequencing

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

High-throughput functional genomics using CRISPR-Cas9.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

RNAi screening comes of age: improved techniques and complementary approaches

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Genome-scale CRISPR-Cas9 knockout screening in human cells

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Genetic screens in human cells using the CRISPR-Cas9 system

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

ATARiS: computational quantification of gene suppression phenotypes from multisample RNAi screens

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

An accurate paired sample test for count data

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Gene expression profiling of human breast tissue samples using SAGE-Seq

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Highly parallel identification of essential genes in cancer cells

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

Cancer proliferation gene discovery through functional genomics.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870715

10.1093/BIOINFORMATICS/BTX335

31 August 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

journals/bioinformatics/JeongKRZL17

11 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28541456 AND SRC:MED&resulttype=core&format=json

11 June 2020

28541456

1 reference