G-quadruplex structures mark human regulatory chromatin (Q38746800)

6 September 2017

title

G-quadruplex structures mark human regulatory chromatin (English)

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6 September 2017

Aled Parry

6

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Jeremy Pike

Jeremy Pike

8

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Marco Di Antonio

Marco Di Antonio

7

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Dario Beraldi

Dario Beraldi

2

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David Tannahill

David Tannahill

11

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Masashi Narita

Masashi Narita

10

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author name string

Robert Hänsel-Hertsch

1

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6 September 2017

Stefanie V Lensing

3

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6 September 2017

Giovanni Marsico

4

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6 September 2017

Katherine Zyner

5

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6 September 2017

Hiroshi Kimura

9

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6 September 2017

Shankar Balasubramanian

12

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6 September 2017

language of work or name

English

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publication date

12 September 2016

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6 September 2017

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6 September 2017

volume

48

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6 September 2017

issue

10

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6 September 2017

page(s)

1267-1272

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G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD.

6 September 2017

cites work

1 reference

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

21 January 2018

1 reference

DNA secondary structures: stability and function of G-quadruplex structures

21 January 2018

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The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo

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C9orf72 nucleotide repeat structures initiate molecular cascades of disease.

21 January 2018

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G4-associated human diseases

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RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer

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Unravelling the genomic targets of small molecules using high-throughput sequencing

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Small-molecule-induced DNA damage identifies alternative DNA structures in human genes

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The accessible chromatin landscape of the human genome

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Developmental fate and cellular maturity encoded in human regulatory DNA landscapes

21 January 2018

1 reference

Quantitative visualization of DNA G-quadruplex structures in human cells

21 January 2018

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G-quadruplex structures are stable and detectable in human genomic DNA.

21 January 2018

1 reference

High-throughput sequencing of DNA G-quadruplex structures in the human genome

21 January 2018

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Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.

21 January 2018

1 reference

Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins

21 January 2018

1 reference

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

21 January 2018

1 reference

ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.

21 January 2018

1 reference

DNA Replication through G-Quadruplex Motifs Is Promoted by the Saccharomyces cerevisiae Pif1 DNA Helicase

21 January 2018

1 reference

Normal keratinization in a spontaneously immortalized aneuploid human keratinocyte cell line

21 January 2018

1 reference

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

21 January 2018

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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 January 2018

1 reference

Prevalence of quadruplexes in the human genome

21 January 2018

1 reference

How long is too long? Effects of loop size on G-quadruplex stability

21 January 2018

1 reference

Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences

21 January 2018

1 reference

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro.

21 January 2018

1 reference

Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation

21 January 2018

1 reference

Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential

21 January 2018

1 reference

The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage

21 January 2018

1 reference

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

21 January 2018

1 reference

A synthetic inhibitor of histone deacetylase, MS-27-275, with marked in vivo antitumor activity against human tumors

21 January 2018

1 reference

Epigenome mapping reveals distinct modes of gene regulation and widespread enhancer reprogramming by the oncogenic fusion protein EWS-FLI1.

21 January 2018

1 reference

A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres

21 January 2018

1 reference

Elevated levels of G-quadruplex formation in human stomach and liver cancer tissues

21 January 2018

1 reference

Guanine quadruplex structures localize to heterochromatin.

21 January 2018

1 reference

Telomestatin-induced telomere uncapping is modulated by POT1 through G-overhang extension in HT1080 human tumor cells.

21 January 2018

1 reference

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

21 January 2018

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.

21 January 2018

1 reference

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop

21 January 2018

1 reference

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.

21 January 2018

1 reference

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

Galaxy: a platform for interactive large-scale genome analysis

21 January 2018

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FIMO: scanning for occurrences of a given motif

21 January 2018

1 reference

MEME-ChIP: motif analysis of large DNA datasets

21 January 2018

1 reference

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

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PAVIS: a tool for Peak Annotation and Visualization.

21 January 2018

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Pan-cancer patterns of somatic copy number alteration

21 January 2018

1 reference

Fiji: an open-source platform for biological-image analysis

21 January 2018

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The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies

21 January 2018

1 reference

Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling

21 January 2018

1 reference

Regulation of RNA polymerase II activation by histone acetylation in single living cells.

21 January 2018

1 reference

NIH Image to ImageJ: 25 years of image analysis

21 January 2018

1 reference

Statistical tests for measures of colocalization in biological microscopy

21 January 2018

1 reference

Detection of G-quadruplex DNA in mammalian cells

21 January 2018

1 reference

TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes

21 January 2018

1 reference

12 December 2020

Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA.

1 reference

12 December 2020

Rif1 binds to G quadruplexes and suppresses replication over long distances.

1 reference

12 December 2020

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

1 reference

12 December 2020

Identifiers

DOI

10.1038/NG.3662

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6 September 2017

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