Continuum descriptions of membranes and their interaction with proteins: Towards chemically accurate models. (Q38725688)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26853937 AND SRC:MED&resulttype=core&format=json

7 March 2020

review article

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title

Continuum descriptions of membranes and their interaction with proteins: Towards chemically accurate models (English)

1 reference

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7 March 2020

2

1 reference

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7 March 2020

author name string

David Argudo

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26853937 AND SRC:MED&resulttype=core&format=json

7 March 2020

Frank V Marcoline

series ordinal

3

1 reference

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7 March 2020

Michael Grabe

series ordinal

4

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7 March 2020

language of work or name

English

0 references

publication date

4 February 2016

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7 March 2020

number of pages

16

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Biochimica et Biophysica Acta

inferred from page(s)

published in

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7 March 2020

volume

1858

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7 March 2020

issue

7 Pt B

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7 March 2020

page(s)

1619-1634

1 reference

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Mechanical properties of lipid bilayers from molecular dynamics simulation

7 March 2020

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1 reference

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Membrane Protein Properties Revealed through Data-Rich Electrostatics Calculations

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Indolicidin binding induces thinning of a lipid bilayer

6 September 2017

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Shape matters in protein mobility within membranes

6 September 2017

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Geometrical membrane curvature as an allosteric regulator of membrane protein structure and function

6 September 2017

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6 September 2017

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6 September 2017

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Ca2 -dependent phospholipid scrambling by a reconstituted TMEM16 ion channel.

6 September 2017

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Influenza virus A M2 protein generates negative Gaussian membrane curvature necessary for budding and scission.

6 September 2017

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Connection between oligomeric state and gating characteristics of mechanosensitive ion channels

6 September 2017

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A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores

6 September 2017

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The cost of living in the membrane: a case study of hydrophobic mismatch for the multi-segment protein LeuT.

6 September 2017

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6 September 2017

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Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association

6 September 2017

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Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A.

6 September 2017

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Determining Biomembrane Bending Rigidities from Simulations of Modest Size

6 September 2017

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TMEM16F forms a Ca2 -activated cation channel required for lipid scrambling in platelets during blood coagulation

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption.

6 September 2017

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New insights into BAR domain-induced membrane remodeling

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations

6 September 2017

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A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL.

6 September 2017

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Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms

6 September 2017

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6 September 2017

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6 September 2017

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A consistent model for thermal fluctuations and protein-induced deformations in lipid bilayers

6 September 2017

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Universal behavior of membranes with sterols.

6 September 2017

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Membrane-protein interactions in mechanosensitive channels

6 September 2017

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Orientation and interaction of oblique cylindrical inclusions embedded in a lipid monolayer: a theoretical model for viral fusion peptides

6 September 2017

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Analytic models for mechanotransduction: gating a mechanosensitive channel

6 September 2017

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BAR domains as sensors of membrane curvature: the amphiphysin BAR structure

6 September 2017

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Structure and mechanism in prokaryotic mechanosensitive channels

6 September 2017

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Open channel structure of MscL and the gating mechanism of mechanosensitive channels.

6 September 2017

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Electrostatics of nanosystems: application to microtubules and the ribosome

6 September 2017

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Inclusion-induced bilayer deformations: effects of monolayer equilibrium curvature

6 September 2017

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Effect of chain length and unsaturation on elasticity of lipid bilayers

6 September 2017

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Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin

6 September 2017

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Energetics of Inclusion-Induced Bilayer Deformations

6 September 2017

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SNAREpins: minimal machinery for membrane fusion

6 September 2017

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Lipidic cubic phases: a novel concept for the crystallization of membrane proteins

6 September 2017

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Reduced surface: an efficient way to compute molecular surfaces

6 September 2017

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Interaction between inclusions embedded in membranes

6 September 2017

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Free-energy determinants of alpha-helix insertion into lipid bilayers

6 September 2017

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Measurement of chain tilt angle in fully hydrated bilayers of gel phase lecithins

6 September 2017

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Probability of alamethicin conductance states varies with nonlamellar tendency of bilayer phospholipids.

6 September 2017

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Classical electrostatics in biology and chemistry

6 September 2017

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Sequential coupling between COPII and COPI vesicle coats in endoplasmic reticulum to Golgi transport

6 September 2017

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Mattress model of lipid-protein interactions in membranes

6 September 2017

1 reference

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The gramicidin A transmembrane channel: a proposed pi(L,D) helix

6 September 2017

1 reference

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Biological membranes as bilayer couples. A molecular mechanism of drug-erythrocyte interactions

6 September 2017

1 reference

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Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime

6 September 2017

1 reference

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Areas, volumes, packing and protein structure

6 September 2017

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Theory of protein-lipid and protein-protein interactions in bilayer membranes

6 September 2017

1 reference

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Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness

6 September 2017

1 reference

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Coalescence of membrane tethers: experiments, theory, and applications

14 September 2017

1 reference

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Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin

14 September 2017

1 reference

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Molecular theory of lipid-protein interaction and the Lalpha-HII transition

14 September 2017

1 reference

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Curvature-mediated interactions between membrane proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Bilayer elasticity at the nanoscale: the need for new terms.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Membrane bending is critical for the stability of voltage sensor segments in the membrane

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

The moving boundary node method: A level set-based, finite volume algorithm with applications to cell motility

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Molecular dynamics simulations of lipid vesicle fusion in atomic detail

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Elastic properties of lipid bilayers: theory and possible experiments

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Lipid-mediated protein interaction in membranes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Membrane composition variation and underdamped mechanics near transmembrane proteins and coats.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Continuum approaches to understanding ion and peptide interactions with the membrane

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Thermal fluctuations in shape, thickness, and molecular orientation in lipid bilayers. II. Finite surface tensions.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Determining the bending modulus of a lipid membrane by simulating buckling.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Membrane bending by protein-protein crowding

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Model-free thermodynamics of fluid vesicles.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Thermal fluctuations in shape, thickness, and molecular orientation in lipid bilayers.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Continuum electromechanical modeling of protein-membrane interactions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

3D pressure field in lipid membranes and membrane-protein complexes.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Influence of rigid inclusions on the bending elasticity of a lipid membrane

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Dynamin recruitment by clathrin coats: a physical step?

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Effect of protein shape on multibody interactions between membrane inclusions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4877259

Orientational order, topology, and vesicle shapes

31 August 2018

1 reference

12 December 2020

Theory of "Ripple" Phases of Lipid Bilayers

1 reference

12 December 2020

Protein-induced bilayer deformations: the lipid tilt degree of freedom

1 reference

12 December 2020

Modulated phases in multicomponent fluid membranes

1 reference

12 December 2020

Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains

1 reference

12 December 2020

A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers

1 reference

12 December 2020

Aggregation and vesiculation of membrane proteins by curvature-mediated interactions

1 reference

12 December 2020

Pathway of membrane fusion with two tension-dependent energy barriers

1 reference

12 December 2020

Fourth-order curvature energy model for the stability of bicontinuous inverted cubic phases in amphiphile-water systems

1 reference

12 December 2020

Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature

1 reference

12 December 2020

Estimation of the bending rigidity and spontaneous curvature of fluid membranes in simulations

1 reference

12 December 2020

Membrane-mediated interactions between rigid inclusions: an effective field theory

1 reference

12 December 2020

Gaussian curvature elasticity determined from global shape transformations and local stress distributions: a comparative study using the MARTINI model

1 reference

12 December 2020

Experimental support for tilt-dependent theory of biomembrane mechanics

1 reference

12 December 2020

High-order power series expansion of the elastic interaction between conical membrane inclusions

1 reference

12 December 2020

New Continuum Approaches for Determining Protein-Induced Membrane Deformations.

1 reference

12 December 2020

The minimum energy of bending as a possible explanation of the biconcave shape of the human red blood cell

1 reference

12 December 2020

Bacteriorhodopsin remains dispersed in fluid phospholipid bilayers over a wide range of bilayer thicknesses

1 reference

12 December 2020

Gramicidin channel-induced lipid membrane deformation energy: influence of chain length and boundary conditions.

1 reference

12 December 2020

Mixed fluid bilayers: Effects of confinement

1 reference

12 December 2020

10.1016/J.BBAMEM.2016.02.003

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26853937 AND SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26853937 AND SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

26853937

1 reference