The power and promise of RNA-seq in ecology and evolution (Q38693313)

5 September 2017

title

The power and promise of RNA-seq in ecology and evolution (English)

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5 September 2017

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5 September 2017

Neil J Gemmell

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Erica V Todd

object named as

Erica V Todd

series ordinal

1

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publication date

12 January 2016

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5 September 2017

number of pages

18

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based on heuristic

inferred from page(s)

published in

Molecular Ecology

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5 September 2017

volume

25

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5 September 2017

issue

6

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5 September 2017

page(s)

1224-1241

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maintained by WikiProject

5 September 2017

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Comparative analysis of RNA sequencing methods for degraded or low-input samples

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Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

21 January 2018

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Differential expression analysis for sequence count data

21 January 2018

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Designing alternative splicing RNA-seq studies. Beyond generic guidelines

21 January 2018

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Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity.

21 January 2018

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Statistical design and analysis of RNA sequencing data

21 January 2018

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Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird

21 January 2018

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 January 2018

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Expression divergence measured by transcriptome sequencing of four yeast species

21 January 2018

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Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

21 January 2018

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Preservation of RNA and DNA from mammal samples under field conditions.

21 January 2018

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Power analysis and sample size estimation for RNA-Seq differential expression

21 January 2018

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The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing

21 January 2018

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5S rRNA and accompanying proteins in gonads: powerful markers to identify sex and reproductive endocrine disruption in fish

21 January 2018

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Proteomics in evolutionary ecology: linking the genotype with the phenotype

21 January 2018

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Applications of next generation sequencing in molecular ecology of non-model organisms

21 January 2018

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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.

21 January 2018

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Phenotypic and genomic plasticity of alternative male reproductive tactics in sailfin mollies.

21 January 2018

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Social determination of sex in reef fishes.

21 January 2018

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Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish

21 January 2018

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How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

21 January 2018

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

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Exome RNA sequencing reveals rare and novel alternative transcripts

21 January 2018

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Sequencing technology does not eliminate biological variability

21 January 2018

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Neurogenomics of behavioral plasticity

21 January 2018

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The Gene Ontology (GO) database and informatics resource

21 January 2018

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Calculating sample size estimates for RNA sequencing data.

21 January 2018

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On the utility of pooling biological samples in microarray experiments

21 January 2018

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The Genome 10K Project: a way forward

21 January 2018

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The technology and biology of single-cell RNA sequencing

21 January 2018

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Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data

21 January 2018

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Evaluation of de novo transcriptome assemblies from RNA-Seq data

21 January 2018

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RNA-seq differential expression studies: more sequence or more replication?

21 January 2018

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Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.

21 January 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 January 2018

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RNA-seq: technical variability and sampling.

21 January 2018

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RNA sequencing: advances, challenges and opportunities

21 January 2018

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Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research

21 January 2018

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Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq

21 January 2018

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subSeq: determining appropriate sequencing depth through efficient read subsampling

21 January 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

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Comparative studies of gene expression and the evolution of gene regulation

21 January 2018

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Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish.

21 January 2018

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The RIN: an RNA integrity number for assigning integrity values to RNA measurements

21 January 2018

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Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics.

21 January 2018

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Simultaneous generation of many RNA-seq libraries in a single reaction

21 January 2018

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Sequencing depth and coverage: key considerations in genomic analyses

21 January 2018

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RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

21 January 2018

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A comparison of methods for differential expression analysis of RNA-seq data

21 January 2018

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Differential expression in RNA-seq: a matter of depth

21 January 2018

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Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

21 January 2018

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RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

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Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

21 January 2018

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RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis

21 January 2018

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Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

21 January 2018

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A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

21 January 2018

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PROPER: comprehensive power evaluation for differential expression using RNA-seq

21 January 2018

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Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

21 January 2018

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Molecular processes of transgenerational acclimation to a warming ocean

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/MEC.13526

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5 September 2017

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