Unique features of long non-coding RNA biogenesis and function (Q38668939)

5 September 2017

title

Unique features of long non-coding RNA biogenesis and function (English)

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5 September 2017

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Jeffrey J Quinn

1

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5 September 2017

Howard Y Chang

series ordinal

2

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5 September 2017

publication date

1 December 2015

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5 September 2017

published in

Nature Reviews Genetics

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5 September 2017

volume

17

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5 September 2017

issue

1

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5 September 2017

page(s)

47-62

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Landscape of transcription in human cells

5 September 2017

cites work

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Noncoding RNA in development

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The long noncoding RNA Neat1 is required for mammary gland development and lactation.

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Structural insights into the stabilization of MALAT1 noncoding RNA by a bipartite triple helix

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A Kaposi's sarcoma virus RNA element that increases the nuclear abundance of intronless transcripts

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Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix

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Circular RNAs are abundant, conserved, and associated with ALU repeats

31 March 2020

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Expanded identification and characterization of mammalian circular RNAs

31 March 2020

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Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs

31 March 2020

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Efficient backsplicing produces translatable circular mRNAs

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Transcriptome-wide discovery of circular RNAs in Archaea

31 March 2020

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Circular RNAs are a large class of animal RNAs with regulatory potency

31 March 2020

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Circular intronic long noncoding RNAs

31 March 2020

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Exon-intron circular RNAs regulate transcription in the nucleus.

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Expression of distinct RNAs from 3' untranslated regions

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

31 March 2020

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Integrator mediates the biogenesis of enhancer RNAs.

31 March 2020

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Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.

31 March 2020

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A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA

31 March 2020

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Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development

31 March 2020

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A micropeptide encoded by a putative long noncoding RNA regulates muscle performance

31 March 2020

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31 March 2020

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Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome

31 March 2020

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

31 March 2020

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Characterization of the RNA content of chromatin

31 March 2020

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When one is better than two: RNA with dual functions

31 March 2020

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Control of somatic tissue differentiation by the long non-coding RNA TINCR.

31 March 2020

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31 March 2020

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31 March 2020

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Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes

31 March 2020

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Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

31 March 2020

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31 March 2020

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lincRNAs act in the circuitry controlling pluripotency and differentiation

31 March 2020

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An mRNA-derived noncoding RNA targets and regulates the ribosome.

31 March 2020

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

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31 March 2020

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31 March 2020

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Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae

31 March 2020

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A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

31 March 2020

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Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species

31 March 2020

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Bidirectional promoters generate pervasive transcription in yeast

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31 March 2020

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31 March 2020

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31 March 2020

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Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs

31 March 2020

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The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells

31 March 2020

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31 March 2020

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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

31 March 2020

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31 March 2020

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Long non-coding RNAs as a source of new peptides

31 March 2020

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Transcriptional enhancers: from properties to genome-wide predictions

31 March 2020

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

31 March 2020

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Widespread transcription at neuronal activity-regulated enhancers

31 March 2020

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Noncoding transcription at enhancers: general principles and functional models

31 March 2020

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Long noncoding RNAs with enhancer-like function in human cells

31 March 2020

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

31 March 2020

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

31 March 2020

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Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients

31 March 2020

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Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus

31 March 2020

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Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia

31 March 2020

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Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

31 March 2020

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Enhancer RNA facilitates NELF release from immediate early genes

31 March 2020

1 reference

Transcriptional regulation by Polycomb group proteins

31 March 2020

1 reference

A strand-specific switch in noncoding transcription switches the function of a Polycomb/Trithorax response element

31 March 2020

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Genomic imprinting in mammals

31 March 2020

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Monoallelic expression of the human H19 gene

31 March 2020

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Epigenetic control of the genome-lessons from genomic imprinting

31 March 2020

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Non-coding RNAs in imprinted gene clusters

31 March 2020

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Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

31 March 2020

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The non-coding Air RNA is required for silencing autosomal imprinted genes

31 March 2020

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Imprinted expression of the Igf2r gene depends on an intronic CpG island.

31 March 2020

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Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

31 March 2020

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

31 March 2020

1 reference

Uncoupling antisense-mediated silencing and DNA methylation in the imprinted Gnas cluster.

31 March 2020

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Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12.

31 March 2020

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Epigenetic regulation by long noncoding RNAs

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

31 March 2020

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31 March 2020

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Modular regulatory principles of large non-coding RNAs

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HOTAIR forms an intricate and modular secondary structure.

31 March 2020

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Long noncoding RNA as modular scaffold of histone modification complexes

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Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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The RNA component of human telomerase

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RNA-mediated epigenetic programming of a genome-rearrangement pathway

31 March 2020

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Multiple knockout mouse models reveal lincRNAs are required for life and brain development

31 March 2020

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Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

31 March 2020

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Genes expressed in neurons of adult male Drosophila

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PubMed

https://pubmed.ncbi.nlm.nih.gov/26666209

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG.2015.10

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Dimensions Publication ID

5 September 2017

1041005829

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