Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes (Q38649121)

5 September 2017

title

Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes (English)

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5 September 2017

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acute myeloid leukemia

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8

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20

Elaine R Mardis

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Obi L Griffith

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Malachi Griffith

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Nichole M Helton

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Maria Trissal

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Jin Zhang

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Christopher A Miller

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David H Spencer

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Jason R Walker

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Vincent Magrini

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Amy Ly

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Daniel C Link

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Ha X Dang

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David E Larson

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Shashikant Kulkarni

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Matthew G Cordes

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Catrina C Fronick

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Robert S Fulton

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Jeffery M Klco

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Timothy J Ley

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Richard K Wilson

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Christopher A Maher

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publication date

28 July 2017

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5 September 2017

published in

Experimental Hematology

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Optimizing cancer genome sequencing and analysis

5 September 2017

cites work

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31 August 2018

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31 August 2018

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Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function

31 August 2018

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The landscape of long noncoding RNAs in the human transcriptome

31 August 2018

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RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1.

31 August 2018

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The long non-coding RNA GAS5 cooperates with the eukaryotic translation initiation factor 4E to regulate c-Myc translation

31 August 2018

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Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer

31 August 2018

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A novel antisense long noncoding RNA within the IGF1R gene locus is imprinted in hematopoietic malignancies

31 August 2018

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Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia

31 August 2018

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31 August 2018

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Functional heterogeneity of genetically defined subclones in acute myeloid leukemia

31 August 2018

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31 August 2018

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The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex

31 August 2018

1 reference

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

31 August 2018

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Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

31 August 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

31 August 2018

1 reference

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Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the In Cis downregulation of a gene cluster that targets NF-kB.

31 August 2018

1 reference

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Identifying recent adaptations in large-scale genomic data

31 August 2018

1 reference

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

31 August 2018

1 reference

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

31 August 2018

1 reference

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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

31 August 2018

1 reference

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Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

31 August 2018

1 reference

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Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation

31 August 2018

1 reference

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The emergence of lncRNAs in cancer biology

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5772960

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

31 August 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

31 August 2018

1 reference

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

31 August 2018

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

31 August 2018

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31 August 2018

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CpG methylation analysis of the MEG3 and SNRPN imprinted genes in acute myeloid leukemia and myelodysplastic syndromes

31 August 2018

1 reference

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High throughput digital quantification of mRNA abundance in primary human acute myeloid leukemia samples

31 August 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

31 August 2018

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A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster

31 August 2018

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The coming of age for Piwi proteins.

31 August 2018

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EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression

31 August 2018

1 reference

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Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

31 August 2018

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

31 August 2018

1 reference

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31 August 2018

The microRNA Registry

1 reference

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The expanding snoRNA world

31 August 2018

1 reference

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The human genome browser at UCSC

31 August 2018

1 reference

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The Ensembl genome database project

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5772960

Crystal structure of the ribosome at 5.5 A resolution

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5772960

Structure and transcription of eukaryotic tRNA genes

31 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5772960

10.1016/J.EXPHEM.2017.07.008

31 August 2018

Identifiers

DOI

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5 September 2017

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