An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins (Q38644412)

5 September 2017

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins (English)

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5 September 2017

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4

Vikram Alva

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author name string

Marcin Michalik

1

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5 September 2017

Marcella Orwick-Rydmark

2

1 reference

5 September 2017

Michael Habeck

3

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5 September 2017

Thomas Arnold

5

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5 September 2017

Dirk Linke

6

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5 September 2017

language of work or name

English

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publication date

3 August 2017

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5 September 2017

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5 September 2017

12

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5 September 2017

8

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5 September 2017

e0182016

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Creative Commons Attribution 4.0 International

5 September 2017

start time

3 August 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Current state of theoretical and experimental studies of the voltage-dependent anion channel (VDAC)

6 September 2017

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Structural basis of outer membrane protein insertion by the BAM complex

6 September 2017

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The structure of the β-barrel assembly machinery complex

6 September 2017

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The Pfam protein families database: towards a more sustainable future

6 September 2017

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A vocabulary of ancient peptides at the origin of folded proteins

6 September 2017

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Structural Aspects of Bacterial Outer Membrane Protein Assembly

6 September 2017

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Temperature Effect on the Nanostructure of SDS Micelles in Water

6 September 2017

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Outer membrane protein biogenesis in Gram-negative bacteria

6 September 2017

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Folding of β-barrel membrane proteins in lipid bilayers - Unassisted and assisted folding and insertion

6 September 2017

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The β-barrel membrane protein insertase machinery from Gram-negative bacteria

6 September 2017

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Biogenesis of beta-barrel proteins in evolutionary context

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Juxtamembrane tryptophans have distinct roles in defining the OmpX barrel-micelle boundary and facilitating protein-micelle association

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Lateral opening and exit pore formation are required for BamA function

6 September 2017

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A mortise-tenon joint in the transmembrane domain modulates autotransporter assembly into bacterial outer membranes

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

High Resolution Structure and Double Electron-Electron Resonance of the Zebrafish Voltage-dependent Anion Channel 2 Reveal an Oligomeric Population

6 September 2017

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SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Membrane protein thermodynamic stability may serve as the energy sink for sorting in the periplasm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Mechanistic link between β barrel assembly and the initiation of autotransporter secretion.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

β-Barrel scaffolds for the grafting of extracellular loops from G-protein-coupled receptors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The bacterial outer membrane β-barrel assembly machinery

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Using Tryptophan Fluorescence to Measure the Stability of Membrane Proteins Folded in Liposomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Structural biology of periplasmic chaperones.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Structure of the human voltage-dependent anion channel

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

PROMALS3D: a tool for multiple protein sequence and structure alignments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The process of folding proteins into membranes: challenges and progress

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Voltage-dependent anion channel (VDAC) as mitochondrial governator--thinking outside the box

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

On the role of VDAC in apoptosis: fact and fiction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Protein quality control in the bacterial periplasm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The versatile beta-barrel membrane protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

A stress sensor for the bacterial periplasm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Protein building blocks preserved by recombination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The structure of the outer membrane protein OmpX from Escherichia coli reveals possible mechanisms of virulence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The Regulated Outer Membrane Protein Omp21 from Comamonas acidovorans Is Identified as a Member of a New Family of Eight-Stranded β-Sheet Proteins by Its Sequence and Properties

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Folding intermediates of a beta-barrel membrane protein. Kinetic evidence for a multi-step membrane insertion mechanism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Permeation of hydrophilic solutes through mitochondrial outer membranes: review on mitochondrial porins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Porins from plants. Molecular cloning and functional characterization of two new members of the porin family

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Folding kinetics and structure of OEP16.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Major Proteins of the Escherichia coli Outer Cell Envelope Membrane. Interaction of Protein II* with Lipopolysaccharide

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Monitoring Backbone Hydrogen-Bond Formation in β-Barrel Membrane Protein Folding

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Conformation and dynamics of the periplasmic membrane-protein-chaperone complexes OmpX-Skp and tOmpA-Skp.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

The use of detergents to purify membrane proteins

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Interactions with hydrophobic clusters in the urea-unfolded membrane protein OmpX.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Enterobacter aerogenes OmpX, a cation-selective channel mar- and osmo-regulated

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

VDAC: the channel at the interface between mitochondria and the cytosol.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Assembly of outer-membrane proteins in bacteria and mitochondria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5542473

Site-Directed Mutagenesis: A Two-Step Method Using PCR and Dpn I

4 November 2018

1 reference

12 December 2020

Carboxy-terminal phenylalanine is essential for the correct assembly of a bacterial outer membrane protein

1 reference

12 December 2020

Characterization of the major envelope protein from Escherichia coli. Regular arrangement on the peptidoglycan and unusual dodecyl sulfate binding

1 reference

12 December 2020

A simple modification of Blum's silver stain method allows for 30 minite detection of proteins in polyacrylamide gels

1 reference

12 December 2020

Strategy for membrane protein crystallization exemplified with OmpA and OmpX

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0182016

Identifiers

DOI

1 reference

5 September 2017

1 reference

5 September 2017

PubMed publication ID

28771529

1 reference