Modeling the noncovalent interactions at the metabolite binding site in purine riboswitches. (Q38357491)

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19 January 2020

title

Modeling the noncovalent interactions at the metabolite binding site in purine riboswitches (English)

1 reference

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19 January 2020

3

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19 January 2020

Abhijit Mitra

series ordinal

4

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19 January 2020

author name string

Purshotam Sharma

series ordinal

1

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19 January 2020

Sitansh Sharma

series ordinal

2

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19 January 2020

publication date

10 January 2009

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Journal of Molecular Modeling

19 January 2020

published in

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19 January 2020

volume

15

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19 January 2020

issue

6

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19 January 2020

page(s)

633-649

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Gene regulation by riboswitches

19 January 2020

cites work

1 reference

12 December 2020

Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis.

1 reference

12 December 2020

Sugar edge/sugar edge base pairs in RNA: stabilities and structures from quantum chemical calculations

1 reference

12 December 2020

Riboswitches: fold and function.

1 reference

12 December 2020

Sensing Small Molecules by Nascent RNA

1 reference

12 December 2020

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

1 reference

12 December 2020

Structure, stability, and dynamics of canonical and noncanonical base pairs: quantum chemical studies

1 reference

12 December 2020

Adenine riboswitches and gene activation by disruption of a transcription terminator

1 reference

12 December 2020

Tandem riboswitch architectures exhibit complex gene control functions

1 reference

12 December 2020

Core requirements of the adenine riboswitch aptamer for ligand binding

1 reference

12 December 2020

New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

1 reference

12 December 2020

Geometric nomenclature and classification of RNA base pairs

1 reference

12 December 2020

Dispersion energy from density-functional theory description of monomers

1 reference

12 December 2020

Folding of the adenine riboswitch

1 reference

12 December 2020

Semiempirical GGA-type density functional constructed with a long-range dispersion correction

1 reference

12 December 2020

Accurate description of van der Waals complexes by density functional theory including empirical corrections

1 reference

12 December 2020

Theoretical analysis of noncanonical base pairing interactions in RNA molecules

1 reference

12 December 2020

Ligand recognition determinants of guanine riboswitches

1 reference

12 December 2020

Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

1 reference

12 December 2020

The riboswitch control of bacterial metabolism

1 reference

12 December 2020

A model study of interactions between TcAChE peripheral site segment Tyr70Val71 and loop 1 of Fasciculin 2

1 reference

12 December 2020

Density functional theory including dispersion corrections for intermolecular interactions in a large benchmark set of biologically relevant molecules

1 reference

12 December 2020

Non-Watson−Crick Base Pairing in RNA. Quantum Chemical Analysis of the cis Watson−Crick/Sugar Edge Base Pair Family

1 reference

12 December 2020

Van der Waals Density Functional for General Geometries

1 reference

12 December 2020

Hydrogen-bonding interactions in the binding of loop 1 of fasciculin 2 to Torpedo californica acetylcholinesterase: a density functional theory study

1 reference

12 December 2020

Genetic control by a metabolite binding mRNA

1 reference

12 December 2020

Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes

1 reference

12 December 2020

An mRNA structure in bacteria that controls gene expression by binding lysine

1 reference

12 December 2020

Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs

1 reference

12 December 2020

'Turning on' riboswitches to their antibacterial potential

1 reference

12 December 2020

Can the DFT-D method describe the full range of noncovalent interactions found in large biomolecules?

1 reference

12 December 2020

An mRNA structure that controls gene expression by binding S-adenosylmethionine

1 reference

12 December 2020

Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

1 reference

12 December 2020

An mRNA structure that controls gene expression by binding FMN

1 reference

12 December 2020

The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

1 reference

12 December 2020

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

1 reference

12 December 2020

Principles of RNA Base Pairing: Structures and Energies of the Trans Watson−Crick/Sugar Edge Base Pairs

1 reference

12 December 2020

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

1 reference

12 December 2020

Mutational Analysis of the Purine Riboswitch Aptamer Domain †

1 reference

12 December 2020

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

1 reference

12 December 2020

Quantum chemical studies of structures and binding in noncanonical RNA base pairs: the trans Watson-Crick:Watson-Crick family

1 reference

12 December 2020

Non-covalent interactions in biomacromolecules.

1 reference

12 December 2020

Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism

1 reference

12 December 2020

Density-functional theory-symmetry-adapted intermolecular perturbation theory with density fitting: a new efficient method to study intermolecular interaction energies

1 reference

12 December 2020

Semiempirical hybrid density functional with perturbative second-order correlation

1 reference

12 December 2020

Density functional theory with dispersion corrections for supramolecular structures, aggregates, and complexes of (bio)organic molecules

1 reference

12 December 2020

Modified Pyrimidines Specifically Bind the Purine Riboswitch

1 reference

12 December 2020

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

1 reference

12 December 2020