Structural interconversion of alternating purine-pyrimidine inverted repeats cloned in supercoiled plasmids. (Q38346853)

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24 September 2019

title

Structural interconversion of alternating purine-pyrimidine inverted repeats cloned in supercoiled plasmids (English)

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24 September 2019

3

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24 September 2019

author name string

J Klysik

1

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24 September 2019

W Zacharias

2

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24 September 2019

M Kwinkowski

4

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24 September 2019

B Uznanski

5

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24 September 2019

A Okruszek

6

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24 September 2019

language of work or name

English

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publication date

1 July 1988

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24 September 2019

published in

Nucleic Acids Research

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24 September 2019

volume

16

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24 September 2019

issue

14B

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24 September 2019

page(s)

6915-6933

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Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

24 September 2019

cites work

1 reference

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The chemistry and biology of left-handed Z-DNA.

6 September 2017

1 reference

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Conformational flexibility of junctions between contiguous B- and Z-DNAs in supercoiled plasmids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA.Fe(II)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

57 Sequencing end-labeled DNA with base-specific chemical cleavages

6 September 2017

1 reference

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Determination of base sequence in nucleic acids with the electron microscope. V. The thymine-specific reactions of osmium tetroxide with deoxyribonucleic acid and its components

6 September 2017

1 reference

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The writhing number of a space curve

6 September 2017

1 reference

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Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

6 September 2017

1 reference

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Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

B- to Z-DNA transition probed by oligonucleotides containing methylphosphonates

6 September 2017

1 reference

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Consecutive A X T pairs can adopt a left-handed DNA structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Temperature dependence of the gel electrophoretic mobility of superhelical DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

The influence of the purine 2-amino group on DNA conformation and stability. Synthesis and conformational analysis of d[T(2-aminoA)]3.

6 September 2017

1 reference

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Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Hhalmethylase and restriction endonuclease as probes for B to Z DNA conformational changes in d(GCGC) sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Diethyl pyrocarbonate: a chemical probe for DNA cruciforms

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Selective degradation of thymidine and thymine deoxynucleotides

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

A structural transition in d(AT)n.d(AT)n inserts within superhelical DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

A two-state conformational equilibrium for alternating (A-T)n sequences in negatively supercoiled DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Stress-induced cruciform formation in a cloned d(CATG)10 sequence

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Site-specific OsO4 modification of the B-Z junctions formed at the (dA-dC)32 region in supercoiled DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

The structure of cruciforms in supercoiled DNA: probing the single-stranded character of nucleotide bases with bisulphite.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=338342

Osmium-labeled polynucleotides. The reaction of osmium tetroxide with deoxyribonucleic acid and synthetic polynucleotides in the presence of tertiary nitrogen donor ligands

23 June 2018

1 reference

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DNA: sequence, structure and supercoiling. The twentieth Colworth medal lecture

23 June 2018

1 reference

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Intervening sequences in human fetal globin genes adopt left-handed Z helices

31 August 2018

1 reference

12 December 2020

An assessment of the Z-DNA forming potential of alternating dA-dT stretches in supercoiled plasmids

1 reference

12 December 2020

1H NMR studies on the interaction between distamycin A and a symmetrical DNA dodecamer

1 reference

12 December 2020

Thermodynamic parameters are sequence-dependent for the supercoil-induced B to Z transition in recombinant plasmids

1 reference

12 December 2020

Recognition of the structural distortions at the junctions between B and Z segments in negatively supercoiled DNA by osmium tetroxide

1 reference

12 December 2020

Z form of poly d(A-T).poly d(A-T) in solution studied by CD and UV spectroscopies

1 reference

12 December 2020

Cruciform structures in supercoiled DNA

1 reference

12 December 2020

Left-handed DNA in restriction fragments and a recombinant plasmid

1 reference

12 December 2020

Conditions which cause the right-handed to left-handed DNA conformational transitions. Evidence for several types of left-handed DNA structures in solution

1 reference

12 December 2020

Relationship between superhelical density and cruciform formation in plasmid pVH51

1 reference

12 December 2020

Spectroscopic studies on acetylaminofluorene-modified (dT-dG)n . (dC-dA)n suggest a left-handed conformation

1 reference

12 December 2020

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

1 reference

12 December 2020

The facile generation of covalently closed, circular DNAs with defined negative superhelical densities

1 reference

12 December 2020

B-Z DNA junctions contain few, if any, nonpaired bases at physiological superhelical densities

1 reference

12 December 2020

Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene

1 reference

12 December 2020

Facile transition of poly[d(TG)·d(CA)] into a left-handed helix in physiological conditions

1 reference

12 December 2020

Left-handed DNA helices, supercoiling, and the B-Z junction

1 reference

12 December 2020

Effects of 5 cytosine methylation on the B-Z transition in DNA restriction fragments and recombinant plasmids

1 reference

12 December 2020

S1 nuclease recognizes DNA conformational junctions between left-handed helical (dT-dG n. dC-dA)n and contiguous right-handed sequences

1 reference

12 December 2020

Poly(ADP-ribosylation) of DNA topoisomerase I from calf thymus

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/16.14.6915

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3405754 AND SRC:MED&resulttype=core&format=json

24 September 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3405754 AND SRC:MED&resulttype=core&format=json

24 September 2019

PubMed publication ID

3405754

1 reference