Copy number change: evolving views on gene amplification. (Q38120560)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

title

Copy number change: evolving views on gene amplification (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

Ellen Neidle

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

author name string

Laura E Cuff

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

publication date

1 July 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

number of pages

13

1 reference

based on heuristic

inferred from page(s)

published in

Future Microbiology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

4 March 2020

page(s)

887-899

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23841635 AND SRC:MED&resulttype=core&format=json

Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention.

4 March 2020

cites work

1 reference

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

21 January 2018

1 reference

On the spot: very local chromosomal rearrangements

21 January 2018

1 reference

Genomic analysis of a key innovation in an experimental Escherichia coli population

21 January 2018

1 reference

Real-time evolution of new genes by innovation, amplification, and divergence

21 January 2018

1 reference

Genome-wide detection of spontaneous chromosomal rearrangements in bacteria

21 January 2018

1 reference

Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing

21 January 2018

1 reference

A naturally occurring gene amplification leading to sulfonamide and trimethoprim resistance in Streptococcus agalactiae

21 January 2018

1 reference

Bacterial niche-specific genome expansion is coupled with highly frequent gene disruptions in deep-sea sediments

21 January 2018

1 reference

A system for the targeted amplification of bacterial gene clusters multiplies antibiotic yield in Streptomyces coelicolor

21 January 2018

1 reference

Stabilized gene duplication enables long-term selection-free heterologous pathway expression.

21 January 2018

1 reference

A strategy of gene overexpression based on tandem repetitive promoters in Escherichia coli

21 January 2018

1 reference

Toward a general theory of adaptive radiation: insights from microbial experimental evolution

21 January 2018

1 reference

Gene duplication as a mechanism of genomic adaptation to a changing environment

21 January 2018

1 reference

The joys and terrors of fast adaptation: new findings elucidate antibiotic resistance and natural selection

21 January 2018

1 reference

Escape from growth restriction in small colony variants of Salmonella typhimurium by gene amplification and mutation

21 January 2018

1 reference

Poxvirus use a "gene accordion" to tune out host defenses

21 January 2018

1 reference

21 January 2018

Evolving promiscuously

1 reference

Gene amplification and adaptive evolution in bacteria.

21 January 2018

1 reference

Bacterial gene amplification: implications for the evolution of antibiotic resistance

21 January 2018

1 reference

Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

21 January 2018

1 reference

Gene amplification and genomic plasticity in prokaryotes

21 January 2018

1 reference

Selection for gene clustering by tandem duplication

21 January 2018

1 reference

Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons

21 January 2018

1 reference

Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments.

21 January 2018

1 reference

Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium

21 January 2018

1 reference

Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses

21 January 2018

1 reference

The life and death of gene families

21 January 2018

1 reference

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

21 January 2018

1 reference

Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi

21 January 2018

1 reference

Differential occurrence of Streptococcus pneumoniae serotype 11E between asymptomatic carriage and invasive pneumococcal disease isolates reflects a unique model of pathogen microevolution

21 January 2018

1 reference

The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types

21 January 2018

1 reference

Global chromosomal structural instability in a subpopulation of starving Escherichia coli cells

21 January 2018

1 reference

Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1.

21 January 2018

1 reference

Multiple pathways of duplication formation with and without recombination (RecA) in Salmonella enterica.

21 January 2018

1 reference

On the Nature of Gene Innovation: Duplication Patterns in Microbial Genomes

21 January 2018

1 reference

Duplication is more common among laterally transferred genes than among indigenous genes

21 January 2018

1 reference

Compensatory gene amplification restores fitness after inter-species gene replacements

21 January 2018

1 reference

Double trouble: medical implications of genetic duplication and amplification in bacteria

21 January 2018

1 reference

Multicopy blaOXA-58 gene as a source of high-level resistance to carbapenems in Acinetobacter baumannii

21 January 2018

1 reference

Novel genetic context of multiple bla OXA-58 genes in Acinetobacter genospecies 3.

21 January 2018

1 reference

Genomic island excisions in Bordetella petrii

21 January 2018

1 reference

Secondary chromosomal attachment site and tandem integration of the mobilizable Salmonella genomic island 1.

21 January 2018

1 reference

Expression of a cryptic secondary sigma factor gene unveils natural competence for DNA transformation in Staphylococcus aureus.

21 January 2018

1 reference

Amplification of the gene for isoleucyl-tRNA synthetase facilitates adaptation to the fitness cost of mupirocin resistance in Salmonella enterica

21 January 2018

1 reference

Gene amplification involves site-specific short homology-independent illegitimate recombination in Acinetobacter sp. strain ADP1.

21 January 2018

1 reference

Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination

21 January 2018

1 reference

Expansion of a chromosomal repeat in Escherichia coli: roles of replication, repair, and recombination functions

21 January 2018

1 reference

Dynamics of gene duplication in the genomes of chlorophyll d-producing cyanobacteria: implications for the ecological niche

21 January 2018

1 reference

Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region

21 January 2018

1 reference

Massive gene duplication event among clinical isolates of the Mycobacterium tuberculosis W/Beijing family

21 January 2018

1 reference

The evolution of gene duplications: classifying and distinguishing between models

21 January 2018

1 reference

Ohno's dilemma: evolution of new genes under continuous selection

21 January 2018

1 reference

Mutational effects and the evolution of new protein functions.

21 January 2018

1 reference

Distinguishing among evolutionary models for the maintenance of gene duplicates

21 January 2018

1 reference

Ohno's model revisited: measuring the frequency of potentially adaptive mutations under various mutational drifts

21 January 2018

1 reference

An adaptive radiation model for the origin of new gene functions

21 January 2018

1 reference

Multicopy suppression underpins metabolic evolvability

21 January 2018

1 reference

Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli

21 January 2018

1 reference

Microarray-based DNA profiling to study genomic aberrations.

21 January 2018

1 reference

Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations

21 January 2018

1 reference

Computational methods for discovering structural variation with next-generation sequencing

21 January 2018

1 reference

Rapid identification of homologous recombinants and determination of gene copy number with reference/query pyrosequencing (RQPS)

21 January 2018

1 reference

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

21 January 2018

1 reference

PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants

21 January 2018

1 reference

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

21 January 2018

1 reference

Whack-an-E. coli with the morbidostat.

21 January 2018

1 reference

Real-time PCR determination of rRNA gene copy number: absolute and relative quantification assays with Escherichia coli

21 January 2018

1 reference

Taking qPCR to a higher level: Analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution

21 January 2018

1 reference

High throughput gene expression measurement with real time PCR in a microfluidic dynamic array

21 January 2018

1 reference

Studying copy number variations using a nanofluidic platform

21 January 2018

1 reference

Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation

21 January 2018

1 reference

Estimated copy number of Bacillus anthracis plasmids pXO1 and pXO2 using digital PCR.

21 January 2018

1 reference

Quantifying EGFR alterations in the lung cancer genome with nanofluidic digital PCR arrays

21 January 2018

1 reference

ZouA, a Putative Relaxase, Is Essential for DNA Amplification in Streptomyces kanamyceticus

21 January 2018

1 reference

Small-scale copy number variation and large-scale changes in gene expression.

21 January 2018

1 reference