The growing family of photoactive yellow proteins and their presumed functional roles (Q38036574)

27 August 2017

title

The growing family of photoactive yellow proteins and their presumed functional roles (English)

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27 August 2017

6

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27 August 2017

Meyer TE

1

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27 August 2017

Kyndt JA

2

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27 August 2017

Memmi S

3

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27 August 2017

Moser T

4

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27 August 2017

Colón-Acevedo B

5

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27 August 2017

Van Beeumen JJ

7

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27 August 2017

language of work or name

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1 October 2012

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Photochemical and Photobiological Sciences

27 August 2017

published in

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27 August 2017

volume

11

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27 August 2017

issue

10

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27 August 2017

page(s)

1495-1514

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Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila

27 August 2017

cites work

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Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

21 January 2018

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Photoactive Yellow Protein: A Prototypic PAS Domain Sensory Protein and Development of a Common Signaling Mechanism

21 January 2018

1 reference

The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein

21 January 2018

1 reference

Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes

21 January 2018

1 reference

Hypercyst mutants in Rhodospirillum centenum identify regulatory loci involved in cyst cell differentiation

21 January 2018

1 reference

Component of the Rhodospirillum centenum photosensory apparatus with structural and functional similarity to methyl-accepting chemotaxis protein chemoreceptors

21 January 2018

1 reference

The photosensor protein Ppr of Rhodocista centenaria is linked to the chemotaxis signalling pathway

21 January 2018

1 reference

Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria

21 January 2018

1 reference

Thermochromatium tepidum photoactive yellow protein/bacteriophytochrome/diguanylate cyclase: characterization of the PYP domain

21 January 2018

1 reference

Rhodobacter capsulatus photoactive yellow protein: genetic context, spectral and kinetics characterization, and mutagenesis

21 January 2018

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Identification of six new photoactive yellow proteins--diversity and structure-function relationships in a bacterial blue light photoreceptor

21 January 2018

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Primary structure of a photoactive yellow protein from the phototrophic bacterium Ectothiorhodospira halophila, with evidence for the mass and the binding site of the chromophore

21 January 2018

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1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore

21 January 2018

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Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein

21 January 2018

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Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

21 January 2018

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Functional expression and site-directed mutagenesis of photoactive yellow protein.

21 January 2018

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Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein

21 January 2018

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Strong hydrogen bond between glutamic acid 46 and chromophore leads to the intermediate spectral form and excited state proton transfer in the Y42F mutant of the photoreceptor photoactive yellow protein

21 January 2018

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New insights into the photocycle of Ectothiorhodospira halophila photoactive yellow protein: photorecovery of the long-lived photobleached intermediate in the Met100Ala mutant.

21 January 2018

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A role of methionine 100 in facilitating PYP(M)-decay process in the photocycle of photoactive yellow protein

21 January 2018

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Crystal structure of a photoactive yellow protein from a sensor histidine kinase: Conformational variability and signal transduction

21 January 2018

1 reference

Isolation, reconstitution and functional characterisation of the Rhodobacter sphaeroides photoactive yellow protein

21 January 2018

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A Conserved Helical Capping Hydrogen Bond in PAS Domains Controls Signaling Kinetics in the Superfamily Prototype Photoactive Yellow Protein

21 January 2018

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Effect of salt and pH on the activation of photoactive yellow protein and gateway mutants Y98Q and Y98F.

21 January 2018

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Structural role of tyrosine 98 in photoactive yellow protein: effects on fluorescence, gateway, and photocycle recovery

21 January 2018

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Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry

21 January 2018

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Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow protein

21 January 2018

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Heterologous production of Halorhodospira halophila holo-photoactive yellow protein through tandem expression of the postulated biosynthetic genes

21 January 2018

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Type IV pili and twitching motility

21 January 2018

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From primary photochemistry to biological function in the blue-light photoreceptors PYP and AppA.

21 January 2018

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A novel photoactive GAF domain of cyanobacteriochrome AnPixJ that shows reversible green/red photoconversion

21 January 2018

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Novel putative photoreceptor and regulatory genes Required for the positive phototactic movement of the unicellular motile cyanobacterium Synechocystis sp. PCC 6803.

21 January 2018

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Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

21 January 2018

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Idiomarina loihiensis sp. nov., a halophilic gamma-Proteobacterium from the Lō'ihi submarine volcano, Hawai'i

21 January 2018

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Locked chromophore analogs reveal that photoactive yellow protein regulates biofilm formation in the deep sea bacterium Idiomarina loihiensis

21 January 2018

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The TetR family of transcriptional repressors.

21 January 2018

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Crystal structures of QacR-diamidine complexes reveal additional multidrug-binding modes and a novel mechanism of drug charge neutralization

21 January 2018

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Light helps bacteria make important lifestyle decisions.

21 January 2018

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Soluble cytochromes and a photoactive yellow protein isolated from the moderately halophilic purple phototrophic bacterium, Rhodospirillum salexigens

21 January 2018

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Sequence evidence for strong conservation of the photoactive yellow proteins from the halophilic phototrophic bacteria Chromatium salexigens and Rhodospirillum salexigens

21 January 2018

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Structural classification of zinc fingers: survey and summary

21 January 2018

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A tale of two functions: enzymatic activity and translational repression by carboxyltransferase

21 January 2018

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Crystal structure of DMA photolyase from Anacystis nidulans

21 January 2018

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Crystal Structure of DNA Photolyase from Escherichia coli

21 January 2018

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Sequence, chromophore extraction and 3-D model of the photoactive yellow protein from Rhodobacter sphaeroides.

21 January 2018

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Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.

21 January 2018

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Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II.

21 January 2018

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Complete genome sequence of Rhodobacter sphaeroides KD131.

21 January 2018

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

21 January 2018

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A gas vesiculate planktonic strain of the purple non-sulfur bacterium Rhodoferax antarcticus isolated from Lake Fryxell, Dry Valleys, Antarctica

21 January 2018

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Gas vesicles in actinomycetes: old buoys in novel habitats?

21 January 2018

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A singular bacteriophytochrome acquired by lateral gene transfer.

21 January 2018

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Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum

21 January 2018

1 reference

Encystment and alkylresorcinol production by Azotobacter vinelandii strains impaired in poly-beta-hydroxybutyrate synthesis

21 January 2018

1 reference

Phenolic lipid synthesis by type III polyketide synthases is essential for cyst formation in Azotobacter vinelandii

21 January 2018

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The photoactivated PYP domain of Rhodospirillum centenum Ppr accelerates the recovery of the bacteriophytochrome domain after white light illumination

21 January 2018

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Regulation of the Ppr histidine kinase by light-induced interactions between its photoactive yellow protein and bacteriophytochrome domains

21 January 2018

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Characterization of pigmented methylotrophic bacteria which nodulate Lotononis bainesii

21 January 2018

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An unorthodox bacteriophytochrome from Rhodobacter sphaeroides involved in turnover of the second messenger c-di-GMP.

21 January 2018

1 reference

Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation.

21 January 2018

1 reference

C-di-GMP: the dawning of a novel bacterial signalling system

21 January 2018

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When the PilZ don't work: effectors for cyclic di-GMP action in bacteria.

21 January 2018

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Riboswitches in eubacteria sense the second messenger cyclic di-GMP

21 January 2018

1 reference

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea

21 January 2018

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Photoactive yellow protein from the halophilic bacterium Salinibacter ruber

21 January 2018

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Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains

21 January 2018

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Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments

21 January 2018

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Genome sequences of eight morphologically diverse Alphaproteobacteria.

21 January 2018

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Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN.

21 January 2018

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Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales

21 January 2018

1 reference

Genome Sequence of Strain IMCC9480, a Xanthorhodopsin-Bearing Betaproteobacterium Isolated from the Arctic Ocean

21 January 2018

1 reference

The dynamic genome of Hydra

21 January 2018

1 reference

AsgD, a new two-component regulator required for A-signalling and nutrient sensing during early development of Myxococcus xanthus

21 January 2018

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Signaling in myxobacteria

21 January 2018

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Light-Stimulated Morphogenesis in the Fruiting Myxobacterium Stigmatella aurantiaca

21 January 2018

1 reference

Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators.

21 January 2018

1 reference

Complete genome sequence of the myxobacterium Sorangium cellulosum

21 January 2018

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Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production.

21 January 2018

1 reference

Genome sequence of Rheinheimera sp. strain A13L, isolated from Pangong Lake, India

21 January 2018

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Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus

21 January 2018

1 reference

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

21 January 2018

1 reference

Evolution of a bacteriophytochrome from light to redox sensor

21 January 2018

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Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.

21 January 2018

1 reference

Complete genome sequence of Allochromatium vinosum DSM 180(T).

21 January 2018

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Comparative genomic analysis of fruiting body formation in Myxococcales

21 January 2018

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Complete genome sequence of Haliangium ochraceum type strain (SMP-2)

21 January 2018

1 reference

Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae

21 January 2018

1 reference

Complete genome sequence of Spirosoma linguale type strain (1)

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1039/C2PP25090J

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27 August 2017

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