Biomolecular computing systems: principles, progress and potential (Q38017924)

27 August 2017

title

Biomolecular computing systems: principles, progress and potential (English)

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27 August 2017

Yaakov Benenson

1

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27 August 2017

language of work or name

English

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22688678

3 January 2025

publication date

12 June 2012

1 reference

full work available at URL

27 August 2017

http://www.nature.com/articles/nrg3197.pdf

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http://www.nature.com/articles/nrg3197

3 January 2025

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3 January 2025

published in

Nature Reviews Genetics

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27 August 2017

volume

13

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27 August 2017

issue

7

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27 August 2017

page(s)

455-468

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From molecular to modular cell biology

27 August 2017

cites work

1 reference

Life, logic and information.

31 March 2020

1 reference

Manufacturing molecules through metabolic engineering

31 March 2020

1 reference

Tolerogenic dendritic cells and the quest for transplant tolerance

31 March 2020

1 reference

Microscale technologies for tissue engineering and biology

31 March 2020

1 reference

Conditional transgenic mouse models: from the basics to genome-wide sets of knockouts and current studies of tissue regeneration.

31 March 2020

1 reference

Molecular computation of solutions to combinatorial problems

31 March 2020

1 reference

DNA solution of hard computational problems

31 March 2020

1 reference

Molecular computation: RNA solutions to chess problems

31 March 2020

1 reference

31 March 2020

1 reference

Engineering life: building a fab for biology

31 March 2020

2 references

31 March 2020

12 December 2020

A synthetic biology challenge: making cells compute

1 reference

Multi-input RNAi-based logic circuit for identification of specific cancer cells

31 March 2020

1 reference

Programming cellular function

31 March 2020

1 reference

Teleonomic mechanisms in cellular metabolism, growth, and differentiation

31 March 2020

1 reference

Functional analysis of chemical systems in vivo using a logical circuit equivalent. V. Molecular biological interpretation of the self-reproducing automata theory and chemico-physical interpretation of information in biological systems

31 March 2020

1 reference

The logical analysis of continuous, non-linear biochemical control networks

31 March 2020

1 reference

Random Boolean network models and the yeast transcriptional network

31 March 2020

1 reference

31 March 2020

Principles of a switch

1 reference

Construction of a genetic toggle switch in Escherichia coli

31 March 2020

1 reference

Rational design of memory in eukaryotic cells

31 March 2020

1 reference

Functional analysis of chemical systems in vivo using a logical circuit equivalent. II. The idea of a molecular automaton

31 March 2020

1 reference

Computational functions in biochemical reaction networks

31 March 2020

1 reference

Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.

31 March 2020

1 reference

On schemes of combinatorial transcription logic

31 March 2020

1 reference

RNA-based computation in live cells

31 March 2020

1 reference

A synthetic multicellular system for programmed pattern formation

31 March 2020

1 reference

Distributed biological computation with multicellular engineered networks

31 March 2020

1 reference

Biomolecular implementation of linear I/O systems

31 March 2020

1 reference

Functional analysis of chemical systems in vivo using a logical circuit equivalent. 3. Analysis using a digital circuit combined with an analogue computer

31 March 2020

1 reference

Chemical implementation of neural networks and Turing machines

31 March 2020

1 reference

Neural network computation with DNA strand displacement cascades

31 March 2020

1 reference

31 March 2020

1 reference

31 March 2020

1 reference

Programmable and autonomous computing machine made of biomolecules

31 March 2020

1 reference

The thermodynamics of computation—a review

31 March 2020

1 reference

Design and construction of a double inversion recombination switch for heritable sequential genetic memory

31 March 2020

1 reference

Formal language theory and DNA: an analysis of the generative capacity of specific recombinant behaviors.

31 March 2020

1 reference

A guide to membrane computing

31 March 2020

1 reference

RNA-mediated epigenetic programming of a genome-rearrangement pathway

31 March 2020

1 reference

31 March 2020

Artificial Biochemistry

1 reference

Cellular logic with orthogonal ribosomes.

31 March 2020

1 reference

A molecular photoionic AND gate based on fluorescent signalling

31 March 2020

1 reference

Medium scale integration of molecular logic gates in an automaton

31 March 2020

1 reference

Training a molecular automaton to play a game

31 March 2020

1 reference

DNA computing circuits using libraries of DNAzyme subunits

31 March 2020

1 reference

Programming biomolecular self-assembly pathways

31 March 2020

1 reference

Engineering entropy-driven reactions and networks catalyzed by DNA.

31 March 2020

1 reference

Enzyme-free nucleic acid logic circuits

31 March 2020

1 reference

Scaling up digital circuit computation with DNA strand displacement cascades

31 March 2020

1 reference

Conditional control of gene expression in the mouse

31 March 2020

1 reference

Group II introns: mobile ribozymes that invade DNA.

31 March 2020

1 reference

Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

31 March 2020

1 reference

Synthetic reversal of epigenetic silencing

31 March 2020

1 reference

31 March 2020

Synthetic RNA circuits

1 reference

31 March 2020

RNA synthetic biology

1 reference

Higher-order cellular information processing with synthetic RNA devices

31 March 2020

1 reference

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

31 March 2020

1 reference

Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins

31 March 2020

1 reference

A universal RNAi-based logic evaluator that operates in mammalian cells

31 March 2020

1 reference

Rationally designed logic integration of regulatory signals in mammalian cells

31 March 2020

1 reference

Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.

31 March 2020

1 reference

Quantitative characteristics of gene regulation by small RNA

31 March 2020

1 reference

Concatenated logic gates using four coupled biocatalysts operating in series

31 March 2020

1 reference

Enzyme-based NAND and NOR logic gates with modular design

31 March 2020

1 reference

Optimization of enzymatic biochemical logic for noise reduction and scalability: how many biocomputing gates can be interconnected in a circuit?

31 March 2020

1 reference

A eukaryotic transcriptional activator bearing the DNA specificity of a prokaryotic repressor

31 March 2020

1 reference

BioLogic gates enable logical transcription control in mammalian cells

31 March 2020

1 reference

Combinatorial synthesis of genetic networks

31 March 2020

1 reference

Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.

31 March 2020

1 reference

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

31 March 2020

1 reference

A synthetic genetic edge detection program.

31 March 2020

1 reference

A Synthetic Optogenetic Transcription Device Enhances Blood-Glucose Homeostasis in Mice

31 March 2020

1 reference

A tunable dual‐promoter integrator for targeting of cancer cells

31 March 2020

1 reference

Strategies for protein synthetic biology.

31 March 2020

1 reference

Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms

31 March 2020

1 reference

Rewiring the specificity of two-component signal transduction systems

31 March 2020

1 reference

Cellular memory and the histone code

31 March 2020

1 reference

Reprogramming control of an allosteric signaling switch through modular recombination

31 March 2020

1 reference

A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae

31 March 2020

1 reference

Undecidability and nonperiodicity for tilings of the plane

31 March 2020

1 reference

Design and self-assembly of two-dimensional DNA crystals

31 March 2020

1 reference

Logical computation using algorithmic self-assembly of DNA triple-crossover molecules

31 March 2020

1 reference

Synthesis of crystals with a programmable kinetic barrier to nucleation

31 March 2020

1 reference

An information-bearing seed for nucleating algorithmic self-assembly

31 March 2020

1 reference

Synthesis from DNA of a molecule with the connectivity of a cube

31 March 2020

1 reference

Folding DNA to create nanoscale shapes and patterns

31 March 2020

1 reference

Self-assembly of DNA into nanoscale three-dimensional shapes

31 March 2020

1 reference

Molecular robots guided by prescriptive landscapes

31 March 2020

1 reference

Organization of intracellular reactions with rationally designed RNA assemblies

31 March 2020

1 reference

A logic-gated nanorobot for targeted transport of molecular payloads

31 March 2020

1 reference

State transitions by molecules

31 March 2020

1 reference

DNA molecule provides a computing machine with both data and fuel

31 March 2020

1 reference

Parallel biomolecular computation on surfaces with advanced finite automata

31 March 2020

1 reference

Stochastic computing with biomolecular automata

31 March 2020

1 reference

An autonomous molecular computer for logical control of gene expression

31 March 2020

1 reference

Detection of Multiple Disease Indicators by an Autonomous Biomolecular Computer

31 March 2020

1 reference

Molecular implementation of simple logic programs

31 March 2020

1 reference

Synthetic gene networks that count

31 March 2020

1 reference

All-DNA finite-state automata with finite memory

31 March 2020

1 reference

Shape, size, and robustness: feasible regions in the parameter space of biochemical networks

31 March 2020

1 reference

A quantitative model of transcription factor-activated gene expression

31 March 2020

1 reference

Gene regulation at the single-cell level

31 March 2020

1 reference

Probing the limits to positional information

31 March 2020

1 reference

Deterministic characterization of stochastic genetic circuits

31 March 2020

1 reference

Synthetic incoherent feedforward circuits show adaptation to the amount of their genetic template

31 March 2020

1 reference

A synthetic oscillatory network of transcriptional regulators

31 March 2020

1 reference

A tunable synthetic mammalian oscillator

31 March 2020

1 reference

A fast, robust and tunable synthetic gene oscillator.

31 March 2020

1 reference

Engineering stability in gene networks by autoregulation

31 March 2020

1 reference

Computational design of synthetic gene circuits with composable parts

31 March 2020

1 reference

Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks

31 March 2020

1 reference

Refinement and standardization of synthetic biological parts and devices

31 March 2020

1 reference

On Computable Numbers, with an Application to the Entscheidungsproblem

31 March 2020

1 reference

Programming gene expression with combinatorial promoters

31 March 2020

1 reference

12 December 2020

Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology

1 reference

12 December 2020

Tapping the computing power of biological molecules gives rise to tiny machines that can speak directly to living cells.

1 reference

12 December 2020

A logical calculus of the ideas immanent in nervous activity. 1943.

1 reference

12 December 2020

Functional analysis of chemical systems in vivo using a logical circuit equivalent

1 reference

12 December 2020

Signaling to p53: breaking the posttranslational modification code

1 reference

12 December 2020

Journal of Theoretical Biology

9

1

415

M Sugita

1961

1 reference

Communications of the ACM

3 January 2025

100

40

1

H Wang

1961

1 reference

3 January 2025

Identifiers

DOI

10.1038/NRG3197

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Dimensions Publication ID

27 August 2017

1051295252

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