ATP utilization and RNA conformational rearrangement by DEAD-box proteins (Q37992169)

26 August 2017

title

ATP utilization and RNA conformational rearrangement by DEAD-box proteins (English)

1 reference

26 August 2017

Arnon Henn

1

0 references

author name string

Michael J Bradley

series ordinal

2

1 reference

26 August 2017

Enrique M De La Cruz

series ordinal

3

1 reference

26 August 2017

publication date

13 February 2012

1 reference

Annual Review of Biophysics

26 August 2017

published in

1 reference

26 August 2017

volume

41

1 reference

26 August 2017

page(s)

247-267

1 reference

Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A

26 August 2017

cites work

1 reference

12 December 2020

DNA-induced dimerization of the Escherichia coli Rep helicase

1 reference

12 December 2020

Mitochondrial splicing requires a protein from a novel helicase family

1 reference

12 December 2020

The ATP-dependent interaction of eukaryotic initiation factors with mRNA.

1 reference

12 December 2020

1 reference

12 December 2020

Oxygen-18 probes of enzymic reactions of phosphate compounds

1 reference

12 December 2020

RNA chaperones and the RNA folding problem

1 reference

12 December 2020

DbpA: a DEAD box protein specifically activated by 23s rRNA.

1 reference

12 December 2020

Escherichia coli rep helicase unwinds DNA by an active mechanism

1 reference

12 December 2020

Active site comparisons highlight structural similarities between myosin and other P-loop proteins

1 reference

12 December 2020

Switches, latches, and amplifiers: common themes of G proteins and molecular motors

1 reference

12 December 2020

Molecular motors: structural adaptations to cellular functions

1 reference

12 December 2020

The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

1 reference

12 December 2020

The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

1 reference

12 December 2020

Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA

1 reference

12 December 2020

The case for a common ancestor: kinesin and myosin motor proteins and G proteins

1 reference

12 December 2020

Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A

1 reference

12 December 2020

Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

1 reference

12 December 2020

X-ray structures of the apo and MgATP-bound states of Dictyostelium discoideum myosin motor domain

1 reference

12 December 2020

Actin and light chain isoform dependence of myosin V kinetics

1 reference

12 December 2020

RNA helicase dynamics in pre-mRNA splicing

1 reference

12 December 2020

Further characterization of the helicase activity of eIF4A. Substrate specificity

1 reference

12 December 2020

Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy

1 reference

12 December 2020

The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA.

1 reference

12 December 2020

E. coli Rep oligomers are required to initiate DNA unwinding in vitro

1 reference

12 December 2020

Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

1 reference

12 December 2020

The guanine nucleotide-binding switch in three dimensions

1 reference

12 December 2020

Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA.

1 reference

12 December 2020

Actin-induced closure of the actin-binding cleft of smooth muscle myosin

1 reference

12 December 2020

The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.

1 reference

12 December 2020

A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro

1 reference

12 December 2020

The Newly Identified Q Motif of DEAD Box Heicases IS Involved in Adenine Recognition

1 reference

12 December 2020

Evolution and classification of P-loop kinases and related proteins

1 reference

12 December 2020

Relating biochemistry and function in the myosin superfamily

1 reference

12 December 2020

Protein displacement by DExH/D "RNA helicases" without duplex unwinding

1 reference

12 December 2020

Do human RNA helicases have a role in cancer?

1 reference

12 December 2020

Fusion of NUP214 to ABL1 on amplified episomes in T-cell acute lymphoblastic leukemia

1 reference

12 December 2020

Strategies for RNA folding and assembly

1 reference

12 December 2020

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

1 reference

12 December 2020

Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA.

1 reference

12 December 2020

Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs

1 reference

12 December 2020

Thermodynamics of nucleotide binding to actomyosin V and VI: a positive heat capacity change accompanies strong ADP binding.

1 reference

12 December 2020

The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity

1 reference

12 December 2020

ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

1 reference

12 December 2020

Hydrodynamic characterization of the DEAD-box RNA helicase DbpA.

1 reference

12 December 2020

The DEAD-box protein family of RNA helicases

1 reference

12 December 2020

The tethered motor domain of a kinesin-microtubule complex catalyzes reversible synthesis of bound ATP.

1 reference

12 December 2020

Discriminatory RNP remodeling by the DEAD-box protein DED1.

1 reference

12 December 2020

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold

1 reference

12 December 2020

BAT1,a Putative Anti‐Inflammatory Gene, Is Associated with Chronic Chagas Cardiomyopathy

1 reference

12 December 2020

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

1 reference

12 December 2020

Human DEAD-box/RNA unwindase rck/p54 contributes to maintenance of cell growth by affecting cell cycle in cultured cells

1 reference

12 December 2020

Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export

1 reference

12 December 2020

Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export

1 reference

12 December 2020

DDX3, a DEAD box RNA helicase with tumor growth-suppressive property and transcriptional regulation activity of the p21waf1/cip1 promoter, is a candidate tumor suppressor

1 reference

12 December 2020

The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

1 reference

12 December 2020

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

1 reference

12 December 2020

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

1 reference

12 December 2020

A DEAD protein that activates intron self-splicing without unwinding RNA

1 reference

12 December 2020

Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

1 reference

12 December 2020

Structure and mechanism of helicases and nucleic acid translocases

1 reference

12 December 2020

Structural basis for DNA duplex separation by a superfamily-2 helicase

1 reference

12 December 2020

RNA helicases--one fold for many functions

1 reference

12 December 2020

Role of DEAD box 1 in retinoblastoma and neuroblastoma

1 reference

12 December 2020

Do DEAD-box proteins promote group II intron splicing without unwinding RNA?

1 reference

12 December 2020

DEAD-box proteins unwind duplexes by local strand separation

1 reference

12 December 2020

RNA quality control in eukaryotes

1 reference

12 December 2020

Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro

1 reference

12 December 2020

Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase

1 reference

12 December 2020

The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA

1 reference

12 December 2020

MDA5/RIG-I and virus recognition.

1 reference

12 December 2020

On helicases and other motor proteins

1 reference

12 December 2020

A conserved phenylalanine of motif IV in superfamily 2 helicases is required for cooperative, ATP-dependent binding of RNA substrates in DEAD-box proteins

1 reference

12 December 2020

RNA chaperones, RNA annealers and RNA helicases

1 reference

12 December 2020

Non-hexameric DNA helicases and translocases: mechanisms and regulation

1 reference

12 December 2020

How RNA unfolds and refolds

1 reference

12 December 2020

Translocation and unwinding mechanisms of RNA and DNA helicases

1 reference

12 December 2020

Interactions between eIF4AI and its accessory factors eIF4B and eIF4H

1 reference

12 December 2020

Mechanism of ATP turnover inhibition in the EJC

1 reference

12 December 2020

A novel dimerization motif in the C-terminal domain of the Thermus thermophilus DEAD box helicase Hera confers substantial flexibility

1 reference

12 December 2020

DEAD-box proteins can completely separate an RNA duplex using a single ATP.

1 reference

12 December 2020

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

1 reference

12 December 2020

Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19

1 reference

12 December 2020

The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner

1 reference

12 December 2020

The DEXD/H-box RNA Helicase DDX19 Is Regulated by an -Helical Switch

1 reference

12 December 2020

Kinetic analysis of the guanine nucleotide exchange activity of TRAPP, a multimeric Ypt1p exchange factor

1 reference

12 December 2020

Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones

1 reference

12 December 2020

A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN.

1 reference

12 December 2020

The DEAD-box protein p72 regulates ERalpha-/oestrogen-dependent transcription and cell growth, and is associated with improved survival in ERalpha-positive breast cancer

1 reference

12 December 2020

The mechanism of ATP-dependent RNA unwinding by DEAD box proteins

1 reference

12 December 2020

Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

1 reference

12 December 2020

The DEAD box helicase YxiN maintains a closed conformation during ATP hydrolysis

1 reference

12 December 2020

The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome

1 reference

12 December 2020

UAP56 is an important regulator of protein synthesis and growth in cardiomyocytes

1 reference

12 December 2020

Protein-facilitated folding of group II intron ribozymes

1 reference

12 December 2020

Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA.

1 reference

12 December 2020

Structural and functional insights into the Myosin motor mechanism

1 reference

12 December 2020

Structure-guided mutational analysis of a yeast DEAD-box protein involved in mitochondrial RNA splicing

1 reference

12 December 2020

SF1 and SF2 helicases: family matters

1 reference

12 December 2020

Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex

1 reference

12 December 2020

Structure of the RNA Binding Domain of a DEAD-Box Helicase Bound to Its Ribosomal RNA Target Reveals a Novel Mode of Recognition by an RNA Recognition Motif

1 reference

12 December 2020

Single-molecule analysis of Mss116-mediated group II intron folding.

1 reference

12 December 2020

Roles of DEAD-box proteins in RNA and RNP Folding

1 reference

12 December 2020

Taming free energy landscapes with RNA chaperones

1 reference

12 December 2020

Structural kinetics of myosin by transient time-resolved FRET

1 reference

12 December 2020

DEAD‐box proteins as RNA helicases and chaperones

1 reference

12 December 2020

A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export

1 reference

12 December 2020

Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins

1 reference

12 December 2020

Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tail

1 reference

12 December 2020

A seesaw model for intermolecular gating in the kinesin motor protein

1 reference

12 December 2020

From unwinding to clamping - the DEAD box RNA helicase family

1 reference

12 December 2020

RNA helicases and remodeling proteins

1 reference

12 December 2020

10.1146/ANNUREV-BIOPHYS-050511-102243

Identifiers

DOI

1 reference

26 August 2017

0 references

1 reference