Sic1 as a timer of Clb cyclin waves in the yeast cell cycle--design principle of not just an inhibitor. (Q37987274)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22356687 AND SRC:MED&resulttype=core&format=json

23 January 2020

title

Sic1 as a timer of Clb cyclin waves in the yeast cell cycle--design principle of not just an inhibitor (English)

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23 January 2020

1

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23 January 2020

author name string

Matteo Barberis

series ordinal

1

1 reference

26 August 2017

language of work or name

English

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publication date

21 March 2012

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22356687 AND SRC:MED&resulttype=core&format=json

23 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22356687 AND SRC:MED&resulttype=core&format=json

23 January 2020

volume

279

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22356687 AND SRC:MED&resulttype=core&format=json

23 January 2020

issue

18

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23 January 2020

page(s)

3386-3410

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From molecular to modular cell biology

23 January 2020

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Subcellular localization of the cyclin dependent kinase inhibitor Sic1 is modulated by the carbon source in budding yeast.

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Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins

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How proteolysis drives the cell cycle

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End of the line: proteolytic degradation of cyclin-dependent kinase inhibitors

21 January 2018

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Control of the yeast cell cycle is associated with assembly/disassembly of the Cdc28 protein kinase complex

21 January 2018

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The cyclin-dependent kinase inhibitor p40SIC1 imposes the requirement for Cln G1 cyclin function at Start

21 January 2018

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APC-dependent proteolysis of the mitotic cyclin Clb2 is essential for mitotic exit

21 January 2018

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The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1.

21 January 2018

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A refined two-hybrid system reveals that SCF(Cdc4)-dependent degradation of Swi5 contributes to the regulatory mechanism of S-phase entry

21 January 2018

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The identification of a second cell cycle control on the HO promoter in yeast: cell cycle regulation of SW15 nuclear entry

21 January 2018

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The role of phosphorylation and the CDC28 protein kinase in cell cycle-regulated nuclear import of the S. cerevisiae transcription factor SWI5.

21 January 2018

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Genes involved in sister chromatid separation are needed for B-type cyclin proteolysis in budding yeast

21 January 2018

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DNA replication is completed in Saccharomyces cerevisiae cells that lack functional Cdc14, a dual-specificity protein phosphatase

21 January 2018

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The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation

21 January 2018

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Cfi1 prevents premature exit from mitosis by anchoring Cdc14 phosphatase in the nucleolus

21 January 2018

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SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box

21 January 2018

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SIC1 is ubiquitinated in vitro by a pathway that requires CDC4, CDC34, and cyclin/CDK activities

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Cascades of multisite phosphorylation control Sic1 destruction at the onset of S phase

21 January 2018

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21 January 2018

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Multisite phosphorylation and the countdown to S phase

21 January 2018

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21 January 2018

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Suprafacial orientation of the SCFCdc4 dimer accommodates multiple geometries for substrate ubiquitination

21 January 2018

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Dynamic equilibrium engagement of a polyvalent ligand with a single-site receptor

21 January 2018

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Context of multiubiquitin chain attachment influences the rate of Sic1 degradation

21 January 2018

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Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34.

21 January 2018

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Functional interaction of 13 yeast SCF complexes with a set of yeast E2 enzymes in vitro

21 January 2018

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Molecular basis for lysine specificity in the yeast ubiquitin-conjugating enzyme Cdc34.

21 January 2018

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Mechanisms of mono- and poly-ubiquitination: Ubiquitination specificity depends on compatibility between the E2 catalytic core and amino acid residues proximal to the lysine.

21 January 2018

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New Insight Into the Role of the Cdc34 Ubiquitin-Conjugating Enzyme in Cell Cycle Regulation via Ace2 and Sic1

21 January 2018

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Cdc53 is a scaffold protein for multiple Cdc34/Skp1/F-box proteincomplexes that regulate cell division and methionine biosynthesis in yeast

21 January 2018

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The CDC4 gene product is associated with the yeast nuclear skeleton

21 January 2018

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Budding yeast SKP1 encodes an evolutionarily conserved kinetochore protein required for cell cycle progression

21 January 2018

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Cdc53p acts in concert with Cdc4p and Cdc34p to control the G1-to-S-phase transition and identifies a conserved family of proteins

21 January 2018

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The yeast cell cycle gene CDC34 encodes a ubiquitin-conjugating enzyme

21 January 2018

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Selective degradation of ubiquitinated Sic1 by purified 26S proteasome yields active S phase cyclin-Cdk

21 January 2018

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Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets

21 January 2018

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21 January 2018

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Yeast Ran-binding protein Yrb1p is required for efficient proteolysis of cell cycle regulatory proteins Pds1p and Sic1p

21 January 2018

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Inhibitors of mammalian G1 cyclin-dependent kinases

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Multisite protein phosphorylation makes a good threshold but can be a poor switch

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Multisite phosphorylation provides an effective and flexible mechanism for switch-like protein degradation

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A phosphorylation-driven ubiquitination switch for cell-cycle control

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Building a cellular switch: more lessons from a good egg.

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Phosphorylation and proteolysis: partners in the regulation of cell division in budding yeast

21 January 2018

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Flexibility and governance in eukaryotic DNA replication.

21 January 2018

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Cell size at S phase initiation: an emergent property of the G1/S network

21 January 2018

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Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?

21 January 2018

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Mathematical modelling of DNA replication reveals a trade-off between coherence of origin activation and robustness against rereplication

21 January 2018

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Cell-signalling dynamics in time and space

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CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae

21 January 2018

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Recruitment of Thr 319-phosphorylated Ndd1p to the FHA domain of Fkh2p requires Clb kinase activity: a mechanism for CLB cluster gene activation

21 January 2018

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Functional characterization of rpn3 uncovers a distinct 19S proteasomal subunit requirement for ubiquitin-dependent proteolysis of cell cycle regulatory proteins in budding yeast

21 January 2018

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Conservation and function of a potential substrate-binding domain in the yeast Clb5 B-type cyclin

21 January 2018

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A novel multiple affinity purification tag and its use in identification of proteins associated with a cyclin-CDK complex

21 January 2018

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Targeted proteomic study of the cyclin-Cdk module.

21 January 2018

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Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

21 January 2018

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A global protein kinase and phosphatase interaction network in yeast.

21 January 2018

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Unraveling interactions of cell cycle‐regulating proteins Sic1 and B‐type cyclins in living yeast cells: a FLIM‐FRET approach

21 January 2018

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Targets of the cyclin-dependent kinase Cdk1

21 January 2018

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Genetic and biochemical evaluation of the importance of Cdc6 in regulating mitotic exit

21 January 2018

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Mutations of the CK2 phosphorylation site of Sic1 affect cell size and S-Cdk kinase activity in Saccharomyces cerevisiae.

21 January 2018

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Testing a mathematical model of the yeast cell cycle

21 January 2018

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Global analysis of protein expression in yeast

21 January 2018

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Securin and B-cyclin/CDK are the only essential targets of the APC.

21 January 2018

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Cell cycle regulated transcription in yeast.

21 January 2018

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Closing the cell cycle circle in yeast: G2 cyclin proteolysis initiated at mitosis persists until the activation of G1 cyclins in the next cycle.

21 January 2018

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Role of a ubiquitin-conjugating enzyme in degradation of S- and M-phase cyclins

21 January 2018

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Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6.

21 January 2018

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Mutagenic analysis of the destruction signal of mitotic cyclins and structural characterization of ubiquitinated intermediates

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Control of cyclin ubiquitination by CDK-regulated binding of Hct1 to the anaphase promoting complex

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

APC(Cdc20) promotes exit from mitosis by destroying the anaphase inhibitor Pds1 and cyclin Clb5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Phosphorylation by Cdc28 activates the Cdc20-dependent activity of the anaphase-promoting complex

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Early expressed Clb proteins allow accumulation of mitotic cyclin by inactivating proteolytic machinery during S phase

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Activity of the APC(Cdh1) form of the anaphase-promoting complex persists until S phase and prevents the premature expression of Cdc20p

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

The toposome: a new twist on topoisomerase IIalpha

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Irreversibility of mitotic exit is the consequence of systems-level feedback.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Order propensity of an intrinsically disordered protein, the cyclin-dependent-kinase inhibitor Sic1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Defining structural domains of an intrinsically disordered protein: Sic1, the cyclin-dependent kinase inhibitor of Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Electrospray ionization-mass spectrometry conformational analysis of isolated domains of an intrinsically disordered protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex

21 January 2018

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https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Molecular basis for the specificity of p27 toward cyclin-dependent kinases that regulate cell division

21 January 2018

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p27 binds cyclin-CDK complexes through a sequential mechanism involving binding-induced protein folding

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Substrate recruitment to cyclin-dependent kinase 2 by a multipurpose docking site on cyclin A.

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Differential susceptibility of yeast S and M phase CDK complexes to inhibitory tyrosine phosphorylation

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Swi5 Controls a Novel Wave of Cyclin Synthesis in Late Mitosis

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Mitotic CDKs control the metaphase-anaphase transition and trigger spindle elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Fluorescence lifetime imaging microscopy: spatial resolution of biochemical processes in the cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Imaging protein molecules using FRET and FLIM microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Differential function and expression of Saccharomyces cerevisiae B-type cyclins in mitosis and meiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

CLB5 and CLB6 are required for premeiotic DNA replication and activation of the meiotic S/M checkpoint

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Specialization and targeting of B-type cyclins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Multiple levels of cyclin specificity in cell-cycle control

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Inhibitory phosphorylation of the APC regulator Hct1 is controlled by the kinase Cdc28 and the phosphatase Cdc14.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Analysis of the mitotic exit control system using locked levels of stable mitotic cyclin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Periodic cyclin-Cdk activity entrains an autonomous Cdc14 release oscillator

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Functions of the mitotic B-type cyclins CLB1, CLB2, and CLB3 at mitotic exit antagonized by the CDC14 phosphatase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

A quantitative model for ordered Cdk substrate dephosphorylation during mitotic exit

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Mitogen-activated protein kinase Hog1 mediates adaptation to G1 checkpoint arrest during arsenite and hyperosmotic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Time-dependent quantitative multicomponent control of the G₁-S network by the stress-activated protein kinase Hog1 upon osmostress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PHO85.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Phosphorylation of sic1, a cyclin-dependent kinase (Cdk) inhibitor, by Cdk including Pho85 kinase is required for its prompt degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

CDK Pho85 targets CDK inhibitor Sic1 to relieve yeast G1 checkpoint arrest after DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Pho85 and signaling environmental conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Positive or negative roles of different cyclin-dependent kinase Pho85-cyclin complexes orchestrate induction of autophagy in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

TOR signaling in growth and metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

One-thousand-and-one substrates of protein kinase CK2?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Cdc34 C-terminal tail phosphorylation regulates Skp1/cullin/F-box (SCF)-mediated ubiquitination and cell cycle progression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Sic1 is phosphorylated by CK2 on Ser201 in budding yeast cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

In CK2 inactivated cells the cyclin dependent kinase inhibitor Sic1 is involved in cell-cycle arrest before the onset of S phase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

G1 cyclins block the Ime1 pathway to make mitosis and meiosis incompatible in budding yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Control of landmark events in meiosis by the CDK Cdc28 and the meiosis-specific kinase Ime2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Saccharomyces cerevisiae Ime2 phosphorylates Sic1 at multiple PXS/T sites but is insufficient to trigger Sic1 degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Sic1-induced DNA rereplication during meiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

The Dcr2p phosphatase destabilizes Sic1p in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

p27Kip1 inhibits cyclin D-cyclin-dependent kinase 4 by two independent modes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

New functional activities for the p21 family of CDK inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

The p21(Cip1) and p27(Kip1) CDK 'inhibitors' are essential activators of cyclin D-dependent kinases in murine fibroblasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

CDK inhibitors: positive and negative regulators of G1-phase progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

A low number of SIC1 mRNA molecules ensures a low noise level in cell cycle progression of budding yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

The Cln3 cyclin is down-regulated by translational repression and degradation during the G1 arrest caused by nitrogen deprivation in budding yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Confirmation of organized modularity in the yeast interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

The nature of systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Oscillations and temporal signalling in cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Characterization of four B-type cyclin genes of the budding yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Systems Biology: Did we know it all along?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Structural biology: Breaking the protein rules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

CK2 regulates in vitro the activity of the yeast cyclin-dependent kinase inhibitor Sic1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X

Mitotic treasures in the nucleolus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111/J.1742-4658.2012.08542.X