More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation. (Q37865814)

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28 January 2020

review article

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title

More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation (English)

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alternative mRNA splicing, via spliceosome

28 January 2020

main subject

non-coding RNA

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1 reference

2

Tom Misteli

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28 January 2020

author name string

Reini F Luco

series ordinal

1

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28 January 2020

publication date

15 April 2011

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Current Opinion in Genetics & Development

28 January 2020

published in

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28 January 2020

volume

21

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issue

4

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28 January 2020

page(s)

366-372

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A slow RNA polymerase II affects alternative splicing in vivo

28 January 2020

cites work

1 reference

12 December 2020

MAZ elements alter transcription elongation and silencing of the fibroblast growth factor receptor 2 exon IIIb

1 reference

12 December 2020

Multiple links between transcription and splicing

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12 December 2020

Aberrant and alternative splicing in cancer

1 reference

12 December 2020

Towards a splicing code

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12 December 2020

Systematic identification and analysis of exonic splicing silencers.

1 reference

12 December 2020

Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells

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12 December 2020

The human SWI/SNF subunit Brm is a regulator of alternative splicing

1 reference

12 December 2020

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

1 reference

12 December 2020

Alternative splicing: new insights from global analyses

1 reference

12 December 2020

An RNA map predicting Nova-dependent splicing regulation

1 reference

12 December 2020

MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development

1 reference

12 December 2020

The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing

1 reference

12 December 2020

Splicing in disease: disruption of the splicing code and the decoding machinery

1 reference

12 December 2020

Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

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12 December 2020

A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo.

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12 December 2020

The splicing factor SC35 has an active role in transcriptional elongation

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12 December 2020

Tissue-specific splicing factor gene expression signatures

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12 December 2020

Alternative isoform regulation in human tissue transcriptomes

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12 December 2020

The DNA-encoded nucleosome organization of a eukaryotic genome

1 reference

12 December 2020

Alternative splicing: regulation without regulators

1 reference

12 December 2020

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

1 reference

12 December 2020

Differential chromatin marking of introns and expressed exons by H3K36me3.

1 reference

12 December 2020

Pre-mRNA processing reaches back to transcription and ahead to translation

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12 December 2020

Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation

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12 December 2020

Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing.

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12 December 2020

DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.

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12 December 2020

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

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12 December 2020

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

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12 December 2020

Nucleosome positioning as a determinant of exon recognition

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12 December 2020

Chromatin organization marks exon-intron structure

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12 December 2020

Nucleosomes are well positioned in exons and carry characteristic histone modifications

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12 December 2020

Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila

1 reference

12 December 2020

Rates of in situ transcription and splicing in large human genes

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12 December 2020

Nucleosomes are preferentially positioned at exons in somatic and sperm cells

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12 December 2020

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

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12 December 2020

Biased chromatin signatures around polyadenylation sites and exons

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12 December 2020

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

1 reference

12 December 2020

Regulation of alternative splicing by histone modifications

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12 December 2020

MicroRNAs coordinate an alternative splicing network during mouse postnatal heart development

1 reference

12 December 2020

Deciphering the splicing code

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12 December 2020

Relationship between nucleosome positioning and DNA methylation

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12 December 2020

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB.

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12 December 2020

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

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12 December 2020

BRG1 helps RNA polymerase II to overcome a nucleosomal barrier during elongation, in vivo

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12 December 2020

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

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12 December 2020

Splicing-dependent RNA polymerase pausing in yeast

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12 December 2020

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

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12 December 2020

Epigenetics in alternative pre-mRNA splicing

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12 December 2020

Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

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12 December 2020

10.1016/J.GDE.2011.03.004

Identifiers

DOI

1 reference

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28 January 2020

1 reference

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28 January 2020

PubMed publication ID

21497503

1 reference