Automated reconstruction of neuronal morphology: an overview. (Q37813849)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

review article

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title

Automated reconstruction of neuronal morphology: an overview (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

2

Giorgio A Ascoli

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

publication date

27 November 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

published in

Brain Research Reviews

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17 January 2020

volume

67

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17 January 2020

issue

1-2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

94-102

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

Three-dimensional neuron tracing by voxel scooping

17 January 2020

cites work

1 reference

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6 September 2017

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The tree-edit-distance, a measure for quantifying neuronal morphology

6 September 2017

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The morphological identity of insect dendrites

6 September 2017

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Quantifying neuronal size: summing up trees and splitting the branch difference.

6 September 2017

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Live neuron morphology automatically reconstructed from multiphoton and confocal imaging data.

6 September 2017

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A comparative computer simulation of dendritic morphology

6 September 2017

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L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

6 September 2017

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3-D reconstruction of neurons from multichannel confocal laser scanning image series

6 September 2017

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Transmitted light brightfield mosaic microscopy for three-dimensional tracing of single neuron morphology

6 September 2017

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Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

6 September 2017

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Combining optical imaging and computational modeling to analyze structure and function of living neurons.

6 September 2017

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NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth

6 September 2017

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Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging

6 September 2017

1 reference

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NeuroMorpho.Org: a central resource for neuronal morphologies.

6 September 2017

1 reference

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Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser scanning microscopy images

6 September 2017

1 reference

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NeuronMetrics: software for semi-automated processing of cultured neuron images

6 September 2017

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

6 September 2017

1 reference

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Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation

6 September 2017

1 reference

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ModelDB: making models publicly accessible to support computational neuroscience

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Median-based robust algorithms for tracing neurons from noisy confocal microscope images

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Dendrites: bug or feature?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Analysis of tubular structures in three-dimensional confocal images

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Generation, description and storage of dendritic morphology data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

The role of single neurons in information processing.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

An on-line archive of reconstructed hippocampal neurons

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Membrane targeted horseradish peroxidase as a marker for correlative fluorescence and electron microscopy studies.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Three-dimensional digital image analysis of immunostained neurons in thick tissue sections

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Frames-Based Denoising in 3D Confocal Microscopy Imaging.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automated neurite extraction using dynamic programming for high-throughput screening of neuron-based assays.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Detection of the optimal neuron traces in confocal microscopy images

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Progress in functional neuroanatomy: precise automatic geometric reconstruction of neuronal morphology from confocal image stacks

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automatic robust neurite detection and morphological analysis of neuronal cell cultures in high-content screening

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

3D Axon structure extraction and analysis in confocal fluorescence microscopy images

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automated axon length quantification for populations of labelled neurons

1 September 2018

1 reference

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Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automated analysis of neurite branching in cultured cortical neurons using HCA-Vision

1 September 2018

1 reference

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A novel tracing algorithm for high throughput imaging Screening of neuron-based assays.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automated neurite labeling and analysis in fluorescence microscopy images

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

New methods for the computer-assisted 3-D reconstruction of neurons from confocal image stacks

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Class-specific features of neuronal wiring

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Model-based method for improving the accuracy and repeatability of estimating vascular bifurcations and crossovers from retinal fundus images

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Automated algorithms for multiscale morphometry of neuronal dendrites

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Dendritic morphology, local circuitry, and intrinsic electrophysiology of principal neurons in the entorhinal cortex of macaque monkeys

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

Rapid automated three-dimensional tracing of neurons from confocal image stacks

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3086984

A parsimonious description of motoneuron dendritic morphology using computer simulation

1 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21118703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21118703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Neuroinformatics grand challenges

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21118703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BRAINRESREV.2010.11.003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21118703 AND SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

21118703

1 reference