Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses (Q37687662)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24639520 AND SRC:MED&resulttype=core&format=json

10 March 2020

title

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses (English)

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10 March 2020

2

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10 March 2020

Benjamin D. Greenbaum

series ordinal

1

object named as

Benjamin D Greenbaum

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10 March 2020

author name string

Arnold J Levine

series ordinal

3

1 reference

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10 March 2020

Rémi Monasson

series ordinal

4

1 reference

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10 March 2020

language of work or name

English

0 references

publication date

17 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24639520 AND SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

10 March 2020

published in

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10 March 2020

volume

111

1 reference

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10 March 2020

issue

13

1 reference

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10 March 2020

page(s)

5054-5059

1 reference

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Large-scale nucleotide optimization of simian immunodeficiency virus reduces its capacity to stimulate type I interferon in vitro

10 March 2020

cites work

1 reference

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The biased nucleotide composition of HIV-1 triggers type I interferon response and correlates with subtype D increased pathogenicity

23 August 2017

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Evolutionary pressures on simple sequence repeats in prokaryotic coding regions

23 August 2017

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Suppression of TLR9 immunostimulatory motifs in the genome of a gammaherpesvirus

23 August 2017

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Oligonucleotide motifs that disappear during the evolution of influenza virus in humans increase alpha interferon secretion by plasmacytoid dendritic cells.

23 August 2017

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HIV-1 modulates the tRNA pool to improve translation efficiency

23 August 2017

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Live attenuated influenza virus vaccines by computer-aided rational design

23 August 2017

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The evolutionary conundrum of pathogen mimicry

23 August 2017

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Patterns of oligonucleotide sequences in viral and host cell RNA identify mediators of the host innate immune system

23 August 2017

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HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC

23 August 2017

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The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus

23 August 2017

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Virus attenuation by genome-scale changes in codon pair bias

23 August 2017

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Patterns of evolution and host gene mimicry in influenza and other RNA viruses

23 August 2017

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The influenza virus resource at the National Center for Biotechnology Information

23 August 2017

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Comparison of avian and human influenza A viruses reveals a mutational bias on the viral genomes.

23 August 2017

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Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

23 August 2017

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APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo

23 August 2017

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23 August 2017

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The human genome browser at UCSC

23 August 2017

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Initial sequencing and analysis of the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3977288

A Toll-like receptor recognizes bacterial DNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3977288

Evolution of codon usage bias in Drosophila

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3977288

Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?

23 August 2017

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

23 August 2017

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Distinct RNA sequences in the gag region of human immunodeficiency virus type 1 decrease RNA stability and inhibit expression in the absence of Rev protein

23 August 2017

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Mutational inactivation of an inhibitory sequence in human immunodeficiency virus type 1 results in Rev-independent gag expression

23 August 2017

1 reference

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Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

23 August 2017

1 reference

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Evolutionary dynamics of restriction site avoidance.

14 September 2017

1 reference

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A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes

1 September 2018

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Making sense of the Legendre transform

1 September 2018

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Crossref

https://api.crossref.org/works/10.1073/PNAS.1402285111

Recent human influenza A (H1N1) viruses are closely related genetically to strains isolated in 1950

21 January 2018

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Crossref

https://api.crossref.org/works/10.1073/PNAS.1402285111

TLR-mediated immune activation in HIV

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24639520

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1402285111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24639520 AND SRC:MED&resulttype=core&format=json

10 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24639520 AND SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

24639520

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24639520 AND SRC:MED&resulttype=core&format=json