The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach (Q37680400)

21 August 2017

The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach (English)

1 reference

21 August 2017

0 references

Caulobacter crescentus

object named as

Caulobacter crescentus

1 reference

5

0 references

Lucy Shapiro

series ordinal

4

0 references

Harley McAdams

series ordinal

3

0 references

Jennifer B Kozdon

series ordinal

2

object named as

Jennifer B Kozdon

1 reference

21 August 2017

Diego Gonzalez

1

1 reference

PMC publication ID

3973325

21 August 2017

language of work or name

English

0 references

publication date

7 January 2014

1 reference

21 August 2017

Nucleic Acids Research

1 reference

21 August 2017

42

1 reference

21 August 2017

6

1 reference

21 August 2017

3720-3735

1 reference

Creative Commons Attribution 3.0 Unported

21 August 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3973325

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Global transcriptional response of Caulobacter crescentus to iron availability

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DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria

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DNA methylation by CcrM activates the transcription of two genes required for the division of Caulobacter crescentus.

23 August 2017

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Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

23 August 2017

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23 August 2017

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The essential genome of a bacterium

23 August 2017

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An Epigenetic Switch Involving Overlapping Fur and DNA Methylation Optimizes Expression of a Type VI Secretion Gene Cluster

23 August 2017

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The genetic basis of laboratory adaptation in Caulobacter crescentus

23 August 2017

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DNA adenine methylation is required to replicate both Vibrio cholerae chromosomes once per cell cycle

23 August 2017

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Direct detection of DNA methylation during single-molecule, real-time sequencing

23 August 2017

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The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

23 August 2017

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FastTree 2--approximately maximum-likelihood trees for large alignments

23 August 2017

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Getting in the loop: regulation of development in Caulobacter crescentus.

23 August 2017

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REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

23 August 2017

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Epigenetic regulation of the bacterial cell cycle

23 August 2017

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Mammalian cytosine methylation at a glance.

23 August 2017

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Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter.

23 August 2017

1 reference

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Fur controls iron homeostasis and oxidative stress defense in the oligotrophic alpha-proteobacterium Caulobacter crescentus

23 August 2017

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FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

23 August 2017

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Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more.

23 August 2017

1 reference

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A rapid bootstrap algorithm for the RAxML Web servers

23 August 2017

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A self-associating protein critical for chromosome attachment, division, and polar organization in caulobacter

23 August 2017

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A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole

23 August 2017

1 reference

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Presence and role of cytosine methylation in DNA viruses of animals

23 August 2017

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Beta clamp directs localization of mismatch repair in Bacillus subtilis

23 August 2017

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Phylogenomics and signature proteins for the alpha proteobacteria and its main groups

23 August 2017

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A DNA methylation ratchet governs progression through a bacterial cell cycle

23 August 2017

1 reference

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Spatial complexity and control of a bacterial cell cycle

23 August 2017

1 reference

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Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus.

23 August 2017

1 reference

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An assessment of the role of DNA adenine methyltransferase on gene expression regulation in E coli

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Epigenetic gene regulation in the bacterial world

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

N6-methyl-adenine: an epigenetic signal for DNA-protein interactions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DNA mismatch repair: functions and mechanisms

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DnaA couples DNA replication and the expression of two cell cycle master regulators

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Analysis of global gene expression and double-strand-break formation in DNA adenine methyltransferase- and mismatch repair-deficient Escherichia coli

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Conserved modular design of an oxygen sensory/signaling network with species-specific output

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

MUSCLE: multiple sequence alignment with high accuracy and high throughput

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The bacterial cytoskeleton: an intermediate filament-like function in cell shape

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

MrBayes 3: Bayesian phylogenetic inference under mixed models

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Role of SeqA and Dam in Escherichia coli gene expression: a global/microarray analysis

23 August 2017

1 reference

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Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases

23 August 2017

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Complete genome sequence of Caulobacter crescentus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The Brucella abortus CcrM DNA methyltransferase is essential for viability, and its overexpression attenuates intracellular replication in murine macrophages

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Bacterial DNA methylation: a cell cycle regulator?

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Chromosome methylation and measurement of faithful, once and only once per cell cycle chromosome replication in Caulobacter crescentus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Formation of DNA methylation patterns: nonmethylated GATC sequences in gut and pap operons

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria, and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

A cell cycle-regulated bacterial DNA methyltransferase is essential for viability

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Coordinate cell cycle control of a Caulobacter DNA methyltransferase and the flagellar genetic hierarchy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Effects of high levels of DNA adenine methylation on methyl-directed mismatch repair in Escherichia coli

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Basic local alignment search tool

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Regulation of chromosomal replication in Caulobacter crescentus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Phase variation: how to create and coordinate population diversity.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

A phosphorelay system controls stalk biogenesis during cell cycle progression in Caulobacter crescentus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Oscillating global regulators control the genetic circuit driving a bacterial cell cycle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Global analysis of the genetic network controlling a bacterial cell cycle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DNA adenine methylation regulates virulence gene expression in Salmonella enterica serovar Typhimurium.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The DNA [adenine-N6]methyltransferase (Dam) of bacteriophage T4.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Comparative analysis of Caulobacter chromosome replication origins

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Clocks and switches: bacterial gene regulation by DNA adenine methylation.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Maintenance of species identity and controlling speciation of bacteria: a new function for restriction/modification systems?

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Differential gene expression in response to copper in Acidithiobacillus ferrooxidans analyzed by RNA arbitrarily primed polymerase chain reaction

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

Caulobacter Lon protease has a critical role in cell-cycle control of DNA methylation

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

A Caulobacter DNA methyltransferase that functions only in the predivisional cell

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973325

The ECF sigma factor σTis involved in osmotic and oxidative stress responses in Caulobacter crescentus

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/NAR/GKT1352

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT1352

1 reference

21 August 2017

1 reference

PMC publication ID

3973325

21 August 2017

PubMed publication ID

24398711

1 reference

PMC publication ID

3973325