Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA (Q37635662)

21 August 2017

Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA (English)

1 reference

Crossref

https://api.crossref.org/works/10.1002/J.1460-2075.1994.TB06711.X

Escherichia coli proteins

15 May 2024

main subject

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15 May 2024

3

A. Malhotra

1 reference

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15 May 2024

6

N. R. Pace

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15 May 2024

author name string

M. E. Harris

1

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15 May 2024

J. M. Nolan

2

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15 May 2024

J. W. Brown

4

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15 May 2024

S. C. Harvey

5

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15 May 2024

language of work or name

English

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publication date

1 September 1994

1 reference

PMC publication ID

395315

full work available at URL

21 August 2017

https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/j.1460-2075.1994.tb06711.x

1 reference

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https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/7521297/?tool=EBI

15 May 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:7521297

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/7521297/pdf/?tool=EBI

15 May 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:7521297

https://europepmc.org/articles/PMC395315

15 May 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:7521297

https://europepmc.org/articles/PMC395315?pdf=render

15 May 2024

1 reference

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https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002/j.1460-2075.1994.tb06711.x

15 May 2024

1 reference

Crossref

https://api.crossref.org/works/10.1002/J.1460-2075.1994.TB06711.X

http://onlinelibrary.wiley.com/wol1/doi/10.1002/j.1460-2075.1994.tb06711.x/fullpdf

15 May 2024

1 reference

Crossref

https://api.crossref.org/works/10.1002/J.1460-2075.1994.TB06711.X

15 May 2024

1 reference

21 August 2017

13

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21 August 2017

17

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21 August 2017

3953-3963

1 reference

Crystallization of ribozymes and small RNA motifs by a sparse matrix approach

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Further perspective on the catalytic core and secondary structure of ribonuclease P RNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Structure of yeast phenylalanine tRNA at 3 Å resolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Synthesis of small RNAs using T7 RNA polymerase

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Prediction of the three-dimensional structure of Escherichia coli 30S ribosomal subunit: a molecular mechanics approach

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Reconstitution of enzymatic activity from fragments of M1 RNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Recent studies of ribonuclease P.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Product release is a rate-limiting step during cleavage by the catalytic RNA subunit ofEscherichia ColiRNase P

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Nucleotides in precursor tRNAs that are required intact for catalysis by RNase P RNAs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Phylogenetic analysis and evolution of RNase P RNA in proteobacteria

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

The acceptor stem in pre-tRNAs determines the cleavage specificity of RNase P.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Substrate recognition by RNase P and by the catalytic M1 RNA: identification of possible contact points in pre-tRNAs.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

The conformation of loop E of eukaryotic 5S ribosomal RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

The RNA component of the Bacillus subtilis RNase P. Sequence, activity, and partial secondary structure

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Structure of an unusually stable RNA hairpin

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Conformation of an RNA pseudoknot

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Circularly Permuted tRNAs as Specific Photoaffinity Probes of Ribonuclease P RNA Structure

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395315

Model for the three-dimensional folding of 16 S ribosomal RNA

1 September 2018

1 reference

12 December 2020

Gap-scan deletion analysis of Bacillus subtilis RNase P RNA

1 reference

12 December 2020

Crystallographic refinement of yeast aspartic acid transfer RNA

1 reference

12 December 2020

Multiple magnesium ions in the ribonuclease P reaction mechanism

1 reference

12 December 2020

Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme

1 reference

12 December 2020

Cleavage of the disulfide bonds of cystine and oxidized glutathione by phosphorothioate

1 reference

12 December 2020

Protection from chemical modification of nucleotides in complexes of M1 RNA, the catalytic subunit of RNase P from E coli, and tRNA precursors

1 reference

12 December 2020

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

1 reference

12 December 2020

Crystal structure of yeast tRNAAsp

1 reference

12 December 2020

p-Azidophenacyl bromide, a versatile photolabile bifunctional reagent. Reaction with glyceraldehyde-3-phosphate dehydrogenase

1 reference

12 December 2020

Gel electrophoretic analysis of the geometry of a DNA four-way junction

1 reference

12 December 2020

Identifiers

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=7521297

15 May 2024

1 reference

PMC publication ID

395315

21 August 2017

1 reference

PMC publication ID

395315