Breakpoints of gross deletions coincide with non-B DNA conformations (Q37557324)

21 August 2017

Breakpoints of gross deletions coincide with non-B DNA conformations (English)

1 reference

21 August 2017

1

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21 August 2017

8

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21 August 2017

Nadia Chuzhanova

5

0 references

John P Jakupciak

4

object named as

John P Jakupciak

1 reference

21 August 2017

3

Jacquelynn E Larson

1 reference

21 August 2017

Adam Jaworski

2

1 reference

21 August 2017

Shaun S Abeysinghe

6

1 reference

21 August 2017

Catherine D O'Connell

7

1 reference

21 August 2017

Robert D Wells

9

1 reference

21 August 2017

language of work or name

English

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publication date

17 September 2004

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Proceedings of the National Academy of Sciences of the United States of America

21 August 2017

1 reference

21 August 2017

101

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21 August 2017

39

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21 August 2017

14162-14167

1 reference

A palindrome-mediated mechanism distinguishes translocations involving LCR-B of chromosome 22q11.2

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Endogenous DNA double-strand breaks: Production, fidelity of repair, and induction of cancer

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Coincidence of synteny breakpoints with malignancy-related deletions on human chromosome 3.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Double-strand breaks and translocations in cancer

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Identifying hydrogen bond alignments in multistranded DNA architectures by NMR.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Switch junction sequences in PMS2-deficient mice reveal a microhomology-mediated mechanism of Ig class switch recombination.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Segmental duplications: an 'expanding' role in genomic instability and disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Mutation analysis of the entire PKD1 gene: genetic and diagnostic implications

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

AT-rich palindromes mediate the constitutional t(11;22) translocation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

DNA mismatch repair and genetic instability

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

The intrinsically unstable life of DNA triplet repeats associated with human hereditary disorders

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Reduced isotype switching in splenic B cells from mice deficient in mismatch repair enzymes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

The liaison of isotype class switch and mismatch repair: an illegitimate affair

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Chromosome translocation based on illegitimate recombination in human tumors

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

23 August 2017

Triplex DNA structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

L1 sequences in HeLa extrachromosomal circular DNA: evidence for circularization by homologous recombination

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Nonhomologous recombination in mammalian cells: role for short sequence homologies in the joining reaction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Spontaneous deletion formation at the aprt locus of hamster cells: the presence of short sequence homologies and dyad symmetries at deletion termini

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Supercoiling of the DNA template during transcription

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

DNA structure, mutations, and human genetic disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination-associated motifs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Presence of 18-A long hydrogen bond track in the active site of Escherichia coli DNA polymerase I (Klenow fragment). Its requirement in the stabilization of enzyme-template-primer complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Illegitimate recombination in the histone multigenic family generates circular DNAs in Drosophila embryos

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

PKD1 intron 21: triplex DNA formation and effect on replication

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Stable RNA/DNA hybrids in the mammalian genome: inducible intermediates in immunoglobulin class switch recombination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

On the complexity measures of genetic sequences.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Transcription-induced hypersupercoiling of plasmid DNA.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

A 2.5 kb polypyrimidine tract in the PKD1 gene contains at least 23 H-DNA-forming sequences.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

A novel DNA deletion-ligation reaction catalyzed in vitro by a developmentally controlled activity from Tetrahymena cells

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521098

Translocation and gross deletion breakpoints in human inherited disease and cancer II: Potential involvement of repetitive sequence elements in secondary structure formation between DNA ends

25 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Regions of genomic instability on 22q11 and 11q23 as the etiology for the recurrent constitutional t(11;22).

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Detection of thirty novel FBN1 mutations in patients with Marfan syndrome or a related fibrillinopathy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Sticky DNA formation in vivo alters the plasmid dimer/monomer ratio

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Deficiency in Msh2 affects the efficiency and local sequence specificity of immunoglobulin class-switch recombination: parallels with somatic hypermutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0405974101

Pkd1 unusual DNA conformations are recognized by nucleotide excision repair

21 January 2018

1 reference

12 December 2020

A novel sequence-based approach to localize translocation breakpoints identifies the molecular basis of a t(4;22)

1 reference

12 December 2020

Large deletions in the polycystic kidney disease 1 (PKD1) gene

1 reference

12 December 2020

Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation

1 reference

12 December 2020

Direct evidence for the effect of transcription on local DNA supercoiling in vivo

1 reference

12 December 2020

Frequency of deletion formation decreases exponentially with distance between short direct repeats

1 reference

12 December 2020

Folding of green fluorescent protein and the cycle3 mutant

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0405974101

1 reference

21 August 2017

0 references

1 reference

21 August 2017

PubMed publication ID

15377784

1 reference