Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. (Q37519282)

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8 March 2020

title

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment (English)

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5

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Susannah G. Tringe

7

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Jonathan A. Eisen

9

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Cindy J Castelle

1

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Kelly C. Wrighton

3

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Jillian Banfield

10

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2

Laura A Hug

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author name string

Brian C Thomas

4

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Dongying Wu

6

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Steven W Singer

8

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language of work or name

English

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publication date

1 January 2013

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8 March 2020

published in

Nature Communications

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volume

4

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page(s)

2120

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Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

8 March 2020

copyright license

start time

27 August 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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23 August 2017

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Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

23 August 2017

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A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

23 August 2017

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Prodigal: prokaryotic gene recognition and translation initiation site identification

23 August 2017

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Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1

23 August 2017

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Characterization of an electron conduit between bacteria and the extracellular environment

23 August 2017

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Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation

23 August 2017

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Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater

23 August 2017

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Protein structure homology modeling using SWISS-MODEL workspace.

23 August 2017

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A simple, fast, and accurate method of phylogenomic inference

23 August 2017

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Significant contribution of Archaea to extant biomass in marine subsurface sediments

23 August 2017

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An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP).

23 August 2017

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The alternative complex III from Rhodothermus marinus - a prototype of a new family of quinol:electron acceptor oxidoreductases.

23 August 2017

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Look on the positive side! The orientation, identification and bioenergetics of 'Archaeal' membrane-bound nitrate reductases

23 August 2017

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The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth

23 August 2017

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UniRef: comprehensive and non-redundant UniProt reference clusters

23 August 2017

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The pio operon is essential for phototrophic Fe(II) oxidation in Rhodopseudomonas palustris TIE-1.

23 August 2017

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Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool

23 August 2017

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Deciphering the evolution and metabolism of an anammox bacterium from a community genome

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

23 August 2017

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Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer

23 August 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

23 August 2017

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Caldithrix abyssi gen. nov., sp. nov., a nitrate-reducing, thermophilic, anaerobic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent, represents a novel bacterial lineage

23 August 2017

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KEGG: Kyoto Encyclopedia of Genes and Genomes

23 August 2017

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Prokaryotes: the unseen majority

23 August 2017

1 reference

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Novel Division Level Bacterial Diversity in a Yellowstone Hot Spring

23 August 2017

1 reference

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A high-affinity cbb3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum

23 August 2017

1 reference

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Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations

23 August 2017

1 reference

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Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

6 September 2017

1 reference

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Cyanobacterial NDH-1 complexes: novel insights and remaining puzzles

6 September 2017

1 reference

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The fixA and fixB genes are necessary for anaerobic carnitine reduction in Escherichia coli

6 September 2017

1 reference

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Gene expression analysis of energy metabolism mutants of Desulfovibrio vulgaris Hildenborough indicates an important role for alcohol dehydrogenase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

The fixABCX genes in Rhodospirillum rubrum encode a putative membrane complex participating in electron transfer to nitrogenase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Competitive oxidation of volatile fatty acids by sulfate- and nitrate-reducing bacteria from an oil field in Argentina

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Fructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

The cytochrome bd quinol oxidase in Escherichia coli has an extremely high oxygen affinity and two oxygen-binding haems: implications for regulation of activity in vivo by oxygen inhibition.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Species-diversity and pattern-diversity in the study of ecological succession

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Potential methane reservoirs beneath Antarctica.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

NADP Reduction with Reduced Ferredoxin and NADP Reduction with NADH Are Coupled via an Electron-Bifurcating Enzyme Complex inClostridium kluyveri

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

The alternative complex III of Rhodothermus marinus and its structural and functional association with caa3 oxygen reductase

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Genome-wide experimental determination of barriers to horizontal gene transfer.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Unusual ADP-forming acetyl-coenzyme A synthetases from the mesophilic halophilic euryarchaeon Haloarcula marismortui and from the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Bifunctional phosphoglucose/phosphomannose isomerase from the hyperthermophilic archaeon Pyrobaculum aerophilum

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Role of metal-reducing bacteria in arsenic release from Bengal delta sediments.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Two distinct heterodisulfide reductase-like enzymes in the sulfate-reducing archaeon Archaeoglobus profundus

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903129

Methane hydrate stability and anthropogenic climate change

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038/NCOMMS3120

Purification and properties of acetyl-CoA synthetase (ADP-forming), an archaeal enzyme of acetate formation and ATP synthesis, from the hyperthermophile Pyrococcus furiosus

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23979677

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS3120

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23979677 AND SRC:MED&resulttype=core&format=json

8 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23979677 AND SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

23979677

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23979677 AND SRC:MED&resulttype=core&format=json