The unique structure of A-tracts and intrinsic DNA bending (Q37512527)

20 August 2017

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title

The unique structure of A-tracts and intrinsic DNA bending (English)

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20 August 2017

Tali E Haran

1

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author name string

Udayan Mohanty

series ordinal

2

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20 August 2017

publication date

1 February 2009

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Quarterly Reviews of Biophysics

20 August 2017

published in

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20 August 2017

volume

42

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20 August 2017

issue

1

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20 August 2017

page(s)

41-81

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Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material

20 August 2017

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The influence of exocyclic substituents of purine bases on DNA curvature

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Conformational and thermodynamic properties of supercoiled DNA.

21 January 2018

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DNA curvature does not require bifurcated hydrogen bonds or pyrimidine methyl groups

21 January 2018

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Temperature and salt dependence of the gel migration anomaly of curved DNA fragments

21 January 2018

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"...the tyranny of the lattice...".

21 January 2018

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MPD and DNA bending in crystals and in solution.

21 January 2018

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The anatomy of A-, B-, and Z-DNA.

21 January 2018

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DNA structure from A to Z.

21 January 2018

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Effect of supercoiling on the juxtaposition and relative orientation of DNA sites

21 January 2018

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The chromatin-associated protein H-NS.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Estimation of wedge components in curved DNA.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Curved DNA: design, synthesis, and circularization

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Supercoiling-dependent flexibility of adenosine-tract-containing DNA detected by a topological method.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA conformation and protein binding

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Dehydrating agents sharply reduce curvature in DNAs containing A tracts

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Conformational fluctuations of DNA helix

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Sequence-specific binding of counterions to B-DNA.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Kinetics of DNA hydration

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

21 January 2018

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Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G

21 January 2018

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1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

21 January 2018

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Rotational dynamics of curved DNA fragments studied by fluorescence polarization anisotropy

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

21 January 2018

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Topological measurement of an A-tract bend angle: effect of magnesium

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

21 January 2018

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A-Tract bending: insights into experimental structures by computational models

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Measuring the geometry of DNA grooves.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Physical studies of DNA premelting equilibria in duplexes with and without homo dA.dT tracts: correlations with DNA bending

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Preferential counterion binding to A-tract DNA oligomers

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The bacterial enhancer-binding protein NtrC as a molecular machine

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Thermodynamics and premelting conformational changes of phased (dA)5 tracts.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA bending and the initiation of transcription at sigma54-dependent bacterial promoters

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The intrinsic curvature of DNA in solution.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Poly[d(A · T)]and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The virF promoter in Shigella: more than just a curved DNA stretch

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

X-ray fibre diffraction study of an elevated temperature structure of poly(dA) · poly(dT)

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Curved DNA molecules migrate anomalously slowly in polyacrylamide gels even at zero gel concentration

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Curved DNA molecules migrate anomalously slowly in free solution

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosome positioning signals in genomic DNA

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A spectroscopic and calorimetric study of the melting behaviors of a "bent" and a "normal" DNA duplex: [d(GA4T4C)]2 versus [d(GT4A4C)]2.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

High-throughput mapping of the chromatin structure of human promoters

21 January 2018

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In vitro evolution of intrinsically bent DNA

21 January 2018

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Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

21 January 2018

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

21 January 2018

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Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

21 January 2018

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Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo

21 January 2018

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X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A genomic code for nucleosome positioning

21 January 2018

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21 January 2018

DNA in a material world

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7-Deaza-2′-deoxyadenosine and 3-deaza-2′-deoxyadenosine replacing dA within d(A6)-tracts: differential bending at 3′-and 5′-junctions of d(A6) d(T6) and B-DNA

21 January 2018

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Identification of a nuclear protein matrix.

21 January 2018

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Structural basis for DNA bending

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

UV resonance Raman and circular dichroism studies of a DNA duplex containing an A(3)T(3) tract: evidence for a premelting transition and three-centered H-bonds

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Effects of diaminopurine and inosine substitutions on A-tract induced DNA curvature. Importance of the 3'-A-tract junction

21 January 2018

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Dipolar couplings in macromolecular structure determination

21 January 2018

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Signals for TBP/TATA box recognition

21 January 2018

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Structural origins of adenine-tract bending

21 January 2018

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Proton exchange and base-pair opening kinetics in 5'-d(CGCGAATTCGCG)-3' and related dodecamers

21 January 2018

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Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold

21 January 2018

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A high-resolution map of nucleosome positioning on a fission yeast centromere

21 January 2018

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Alteration of A.T base-pair opening kinetics by the ammonium cation in DNA A-tracts

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

In-silico prediction and observations of nuclear matrix attachment

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Nature of DNA sequences at the attachment regions of genes to the nuclear matrix

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Determination of the residence time of water molecules hydrating B'- DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy

21 January 2018

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Homeodomain protein binding sites, inverted repeats, and nuclear matrix attachment regions along the human beta-globin gene complex

21 January 2018

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Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

H-NS: a modulator of environmentally regulated gene expression.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Control of nucleosome positions by DNA sequence and remodeling machines

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Sequence periodicities in chicken nucleosome core DNA.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Sequence dependence of DNA conformational flexibility

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Folding DNA to create nanoscale shapes and patterns

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

21 January 2018

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DNA constraints on transcription activation in vitro

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

The preferential binding of histone H1 to DNA scaffold-associated regions is determined by its C-terminal domain

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA structure: cations in charge?

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 January 2018

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Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Compensating bends in a 16-base-pair DNA oligomer containing a T(3)A(3) segment: A NMR study of global DNA curvature.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosome organization in the Drosophila genome.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Upstream A-tracts increase bacterial promoter activity through interactions with the RNA polymerase alpha subunit

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

A dual transcriptional activation system for the 230 kb plasmid genes coding for virulence-associated antigens of Shigella flexneri

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Identification of a chromosomal gene controlling temperature-regulated expression of Shigella virulence

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Interaction of minor groove binding ligands with long AT tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Remeasuring the double helix

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Bent helical structure in kinetoplast DNA.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Competitive Na( ) and Rb( ) binding in the minor groove of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The persistence length of DNA is reached from the persistence length of its null isomer through an internal electrostatic stretching force

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

DNA curvature at A tracts containing a non-polar thymine mimic

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Solution structure of an A-tract DNA bend

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Kinetoplast DNA network: evolution of an improbable structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Intrinsic curvature in the VP1 gene of SV40: comparison of solution and gel results

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Monovalent cation binding by curved DNA molecules containing variable numbers of a-tracts

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosome positioning and gene regulation.

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

DNA supercoiling allows enhancer action over a large distance

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

21 January 2018

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https://api.crossref.org/works/10.1017/S0033583509004752

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

A new crystal form for the dodecamer C-G-C-G-A-A-T-T-C-G-C-G: symmetry effects on sequence-dependent DNA structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Scaffold/Matrix Attachment Regions and intrinsic DNA curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Thermoregulation of Shigella and Escherichia coli EIEC pathogenicity. A temperature-dependent structural transition of DNA modulates accessibility of virF promoter to transcriptional repressor H-NS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

TBP flanking sequences: asymmetry of binding, long-range effects and consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Structure of d(CGCGAATTCGCG) in the presence of Ca(2 ) ions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The structure of poly(dA):poly(dT) in a condensed state and in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E.coli glnAp2 transcription by NtrC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

How many base-pairs per turn does DNA have in solution and in chromatin? Some theoretical calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

A high-resolution atlas of nucleosome occupancy in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

DNA curvature controls termination of plus strand DNA synthesis at the centre of HIV-1 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Curved helix segments can uniquely orient the topology of supertwisted DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Characteristics of migration patterns of DNA oligomers in gels and the relationship to the question of intrinsic DNA bending

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Dynamics of curved DNA molecules: prediction and experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Sequence-directed curvature of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Involvement of DNA curvature in intergenic regions of prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

DNA bending at adenine . thymine tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Determination of the extent of DNA bending by an adenine-thymine tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

DNA on a tube: electrostatic contribution to stiffness

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Calibration of DNA curvature and a unified description of sequence-directed bending

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Crystal structure of CATGGCCATG and its implications for A-tract bending models

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Bending and curvature calculations in B-DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Functional replacement of a protein-induced bend in a DNA recombination site

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Computational and in vitro analysis of destabilized DNA regions in the interferon gene cluster: potential of predicting functional gene domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Synthetic DNA bending sequences increase the rate of in vitro transcription initiation at the Escherichia coli lac promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Torsional stress stabilizes extended base unpairing in suppressor sites flanking immunoglobulin heavy chain enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Two-dimensional NMR investigation of a bent DNA fragment: assignment of the proton resonances and preliminary structure analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Assessments of DNA inhomogeneities in yeast chromosome III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Magnesium increases the curvature of duplex DNA that contains dA tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Comparative gel electrophoresis measurement of the DNA bend angle induced by the catabolite activator protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Direct comparison of A- and T-strand minor groove interactions in DNA curvature at A tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

A “Hydrat-Ion” Spine in a B-DNA Minor Groove

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

The Dickerson-Drew B-DNA Dodecamer Revisited at Atomic Resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Highly preferential nucleation of histone H1 assembly on scaffold-associated regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Structural details of an adenine tract that does not cause DNA to bend

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Water and Ions in a High Resolution Structure of B-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Sequence-directed curvature of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

DNA bend direction by phase sensitive detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

Base tilt of poly[d(A)]-poly[d(T)] and poly[d(AT)]-poly[d(AT)] in solution determined by linear dichroism

21 January 2018

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Identification and characterization of genomic nucleosome-positioning sequences

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

DNA curvature in solution measured by fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Removal of a single minor-groove functional group eliminates A-tract curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

A- and T-tract-mediated intrinsic curvature in native DNA between the binding site of the upstream activator NtrC and the nifLA promoter of Klebsiella pneumoniae facilitates transcription.

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

The absence of supercoiling in kinetoplast DNA minicircles.

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

The unusual conformation adopted by the adenine tracts in kinetoplast DNA

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Nucleosome reconstitution on plasmid-inserted poly(dA) . poly(dT)

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Superhelix organization by DNA curvature as measured through site-specific labeling

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Supercoiling-induced DNA bending

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

1H two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA).poly(dT)

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

A-Tract Polarity Dominate the Curvature in Flanking Sequences†

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

https://api.crossref.org/works/10.1017/S0033583509004752

1 reference

7 January 2021

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Effect of the crystallizing agent 2-methyl-2,4-pentanediol on the structure of adenine tract DNA in solution

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Molecular dynamics simulations of poly(dA).poly(dT): comparisons between implicit and explicit solvent representations

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Involvement of FIS in the H-NS-mediated regulation of virF gene of Shigella and enteroinvasive Escherichia coli

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Bh-DNA: variations of the poly[d(A)].poly[d(T)] structure within the framework of the fibre diffraction studies

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Bending and flexibility of kinetoplast DNA

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Compression of the DNA minor groove is responsible for termination of DNA synthesis by HIV-1 reverse transcriptase

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

A premelting conformational transition in poly(dA)-Poly(dT) coupled to daunomycin binding

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Sequence Elements Responsible for DNA Curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Cooperativity in A-tract structure and the bending properties of composite TnAn blocks

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Pyrimidine 5-methyl groups influence the magnitude of DNA curvature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Cationic metals promote sequence-directed DNA bending

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

DNA curvature influences the internal motions of supercoiled DNA.

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Ordered water structure around a B-DNA dodecamer. A quantitative study

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Visualization of the bent helix in kinetoplast DNA by electron microscopy

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Intrinsically bent DNA in replication origins and gene promoters.

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Chemical determinants of DNA bending at adenine-thymine tracts

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Phased A-tracts bind to the alpha subunit of RNA polymerase with increased affinity at low temperature

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

Nucleosome positions predicted through comparative genomics

1 reference

https://api.crossref.org/works/10.1017/S0033583509004752

7 January 2021

10.1017/S0033583509004752

Identifiers

DOI

1 reference

20 August 2017

1 reference