Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora (Q37379902)

20 August 2017

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora (English)

1 reference

20 August 2017

1 reference

Paulinella chromatophora

object named as

Paulinella chromatophora

1 reference

5

Michael Melkonian

1 reference

20 August 2017

Debashish Bhattacharya

series ordinal

3

object named as

Debashish Bhattacharya

1 reference

20 August 2017

1

Eva C M Nowack

1 reference

20 August 2017

2

Dana C Price

1 reference

20 August 2017

Anna Singer

4

1 reference

20 August 2017

Arthur R Grossman

series ordinal

6

1 reference

20 August 2017

language of work or name

English

0 references

publication date

10 October 2016

1 reference

Proceedings of the National Academy of Sciences of the United States of America

20 August 2017

1 reference

20 August 2017

113

1 reference

20 August 2017

43

1 reference

20 August 2017

12214-12219

1 reference

"Candidatus Finniella" (Rickettsiales, Alphaproteobacteria), Novel Endosymbionts of Viridiraptorid Amoeboflagellates (Cercozoa, Rhizaria).

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Evolution: Gene transfer in complex cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Horizontal gene transfer: building the web of life.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Turtle: identifying frequent k-mers with cache-efficient algorithms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

The spliced leader trans-splicing mechanism in different organisms: molecular details and possible biological roles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Horizontal gene transfer in eukaryotes: the weak-link model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Scaffolding pre-assembled contigs using SSPACE

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Common ground for protein translocation: access control for mitochondria and chloroplasts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Differential gene retention in plastids of common recent origin.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Multiple alignment of DNA sequences with MAFFT

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

ABySS: a parallel assembler for short read sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Locating proteins in the cell using TargetP, SignalP and related tools

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

The evolution of modern eukaryotic phytoplankton

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Interactions between the nitrogen signal transduction protein PII and N-acetyl glutamate kinase in organisms that perform oxygenic photosynthesis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

A molecular timeline for the origin of photosynthetic eukaryotes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

CAP3: A DNA sequence assembly program

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

dbEST--database for "expressed sequence tags"

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Basic local alignment search tool

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Electron microscopical investigations on Paulinella chromatophora Lauterborn, a thecamoeba containing blue-green endosymbionts (Cyanelles) (author's transl)

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Endosymbiotic origin and differential loss of eukaryotic genes

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Horizontal gene transfer in the acquisition of novel traits by metazoans.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

MITOS: improved de novo metazoan mitochondrial genome annotation

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Another acquisition of a primary photosynthetic organelle is underway in Paulinella chromatophora

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087059

Cutadapt removes adapter sequences from high-throughput sequencing reads

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1608016113

Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.1608016113

A plastid in the making: evidence for a second primary endosymbiosis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27791007

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27791007

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1608016113

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

27791007

1 reference