Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. (Q37356463)

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25 December 2019

title

Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy (English)

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25 December 2019

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1

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6

Vijay S Pande

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25 December 2019

author name string

Linlin Qiu

2

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Deguo Du

3

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Feng Gai

4

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25 December 2019

Stephen J Hagen

5

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25 December 2019

language of work or name

English

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publication date

12 March 2004

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Proceedings of the National Academy of Sciences of the United States of America

25 December 2019

published in

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volume

101

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issue

12

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page(s)

4077-4082

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COMPUTING: Screen Savers of the World Unite!

25 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

How fast is protein hydrophobic collapse?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Analysis of the distributed computing approach applied to the folding of a small beta peptide

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Experimental tests of villin subdomain folding simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

The present view of the mechanism of protein folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Direct molecular dynamics observation of protein folding transition state ensemble

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Absolute comparison of simulated and experimental protein-folding dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

On the simulation of protein folding by short time scale molecular dynamics and distributed computing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Direct observation of the folding and unfolding of a beta-hairpin in explicit water through computer simulation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Helix formation via conformation diffusion search

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Elongation of the BH8 beta-hairpin peptide: Electrostatic interactions in beta-hairpin formation and stability

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Tryptophan zippers: Stable, monomeric -hairpins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Folding dynamics and mechanism of β-hairpin formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

The beta-peptide hairpin in solution: conformational study of a beta-hexapeptide in methanol by NMR spectroscopy and MD simulation

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=384698

An efficient newton-like method for molecular mechanics energy minimization of large molecules

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0305260101

Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0305260101

Rapid comparison of protein structures

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0305260101

Exploring the energy landscape of a beta hairpin in explicit solvent

21 January 2018

1 reference

12 December 2020

Mathematical analysis of coupled parallel simulations

1 reference

12 December 2020

Beta-hairpin folding simulations in atomistic detail using an implicit solvent model

1 reference

12 December 2020

Dynamic NMR Line-Shape Analysis Demonstrates that the Villin Headpiece Subdomain Folds on the Microsecond Time Scale

1 reference

12 December 2020

Structural correspondence between the alpha-helix and the random-flight chain resolves how unfolded proteins can have native-like properties

1 reference

12 December 2020

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0305260101

1 reference

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25 December 2019

0 references

1 reference

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25 December 2019

PubMed publication ID

15020773

1 reference