A short guide for molecular dynamics simulations of RNA systems. (Q37302264)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18930152 AND SRC:MED&resulttype=core&format=json

24 December 2019

review article

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title

A short guide for molecular dynamics simulations of RNA systems (English)

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24 December 2019

2

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24 December 2019

author name string

Yaser Hashem

series ordinal

1

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24 December 2019

publication date

16 October 2008

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24 December 2019

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24 December 2019

volume

47

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24 December 2019

issue

3

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24 December 2019

page(s)

187-197

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Structure of the 70S ribosome complexed with mRNA and tRNA

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Molecular dynamics investigations of hammerhead ribozyme RNA

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Chaos in space and time

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H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations

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Improved sampling methods for molecular simulation

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Quantitative computer simulations of biomolecules: A snapshot

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On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review

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Molecular simulation as an aid to experimentalists.

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Direct comparisons of experimental and calculated neutron structure factors of pure solvents as a method for force field validation.

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Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: diffusion, free energy of hydration, and structural properties

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Binding affinity prediction with different force fields: examination of the linear interaction energy method

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A molecular simulation picture of DNA hydration around A- and B-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2008.09.020

Solvation and hydration of proteins and nucleic acids: a theoretical view of simulation and experiment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/J.YMETH.2008.09.020