Towards environmental systems biology of Shewanella (Q37208297)

18 August 2017

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title

Towards environmental systems biology of Shewanella (English)

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18 August 2017

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2

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18 August 2017

13

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18 August 2017

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James M Tiedje

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18 August 2017

Jennifer M Auchtung

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Jennifer L. Reed

object named as

Jennifer L Reed

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Dmitry Rodionov

object named as

Dmitry A Rodionov

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Igor Jouline

object named as

Igor B Zhulin

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author name string

James K Fredrickson

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18 August 2017

Alexander S Beliaev

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18 August 2017

Michael E Driscoll

5

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18 August 2017

Timothy S Gardner

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18 August 2017

Kenneth H Nealson

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18 August 2017

Andrei L Osterman

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18 August 2017

Grigoriy Pinchuk

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18 August 2017

Jorge L M Rodrigues

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18 August 2017

Margrethe H Serres

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18 August 2017

Alfred M Spormann

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18 August 2017

language of work or name

English

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publication date

7 July 2008

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Nature Reviews Microbiology

18 August 2017

published in

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18 August 2017

volume

6

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18 August 2017

issue

8

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18 August 2017

page(s)

592-603

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Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor

18 August 2017

cites work

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Mediation of sulfur speciation by a black sea facultative anaerobe

31 March 2020

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Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium

31 March 2020

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Effects of medium composition on cell pigmentation, cytochrome content, and ferric iron reduction in a Pseudomonas sp. isolated from crude oil

31 March 2020

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Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov.

31 March 2020

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Reductive dissolution of Fe(III) oxides by Pseudomonas sp. 200.

31 March 2020

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Effect of nitrate on reduction of ferric iron by a bacterium isolated from crude oil

31 March 2020

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Iron promoted reduction of chromate by dissimilatory iron-reducing bacteria

31 March 2020

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Effect of electron donor and solution chemistry on products of dissimilatory reduction of technetium by Shewanella putrefaciens

31 March 2020

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Biological Reduction and Removal of Np(V) by Two Microorganisms

31 March 2020

1 reference

Plutonium(IV) reduction by the metal-reducing bacteria Geobacter metallireducens GS15 and Shewanella oneidensis MR1.

31 March 2020

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Selenite and tellurite reduction by Shewanella oneidensis

31 March 2020

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Microbial reduction and precipitation of vanadium by Shewanella oneidensis

31 March 2020

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Shewanella sediminis sp. nov., a novel Na -requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment

31 March 2020

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Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria

31 March 2020

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Ecology and biotechnology of the genus Shewanella

31 March 2020

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Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

31 March 2020

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MiST: a microbial signal transduction database

31 March 2020

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Molecular evolution of sensory domains in cyanobacterial chemoreceptors

31 March 2020

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Ecological role of energy taxis in microorganisms

31 March 2020

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Identification and analysis of a highly conserved chemotaxis gene cluster in Shewanella species

31 March 2020

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Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome

31 March 2020

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Bacterial small-molecule signaling pathways

31 March 2020

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Cyclic nucleotide research -- still expanding after half a century

31 March 2020

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Roles of cyclic diguanylate in the regulation of bacterial pathogenesis

31 March 2020

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Mechanisms of cyclic-di-GMP signaling in bacteria

31 March 2020

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Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea

31 March 2020

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Involvement of cyclic AMP (cAMP) and cAMP receptor protein in anaerobic respiration of Shewanella oneidensis

31 March 2020

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Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster

31 March 2020

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Sequence and genetic characterization of etrA, an fnr analog that regulates anaerobic respiration in Shewanella putrefaciens MR-1

31 March 2020

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Microarray transcription profiling of a Shewanella oneidensis etrA mutant

31 March 2020

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Isolation and characterization of a Shewanella putrefaciens MR-1 electron transport regulator etrA mutant: reassessment of the role of EtrA.

31 March 2020

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Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.

31 March 2020

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

31 March 2020

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Role for outer membrane cytochromes OmcA and OmcB of Shewanella putrefaciens MR-1 in reduction of manganese dioxide

31 March 2020

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MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR-1.

31 March 2020

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Respiration and growth of Shewanella oneidensis MR-1 using vanadate as the sole electron acceptor

31 March 2020

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Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors

31 March 2020

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

31 March 2020

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Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

31 March 2020

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Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis

31 March 2020

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Identification of 42 possible cytochrome C genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes

31 March 2020

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Identification of genes involved in cytochrome c biogenesis in Shewanella oneidensis, using a modified mariner transposon

31 March 2020

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A conserved histidine in cytochrome c maturation permease CcmB of Shewanella putrefaciens is required for anaerobic growth below a threshold standard redox potential

31 March 2020

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Cloning and sequence of cymA, a gene encoding a tetraheme cytochrome c required for reduction of iron(III), fumarate, and nitrate by Shewanella putrefaciens MR-1

31 March 2020

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Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinone

31 March 2020

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Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1.

31 March 2020

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Isolation and characterization of a transposon mutant of Shewanella putrefaciens MR‐1 deficient in fumarate reductase

31 March 2020

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Respiratory nitrate ammonification by Shewanella oneidensis MR-1.

31 March 2020

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Effects of ISSo2 insertions in structural and regulatory genes of the trimethylamine oxide reductase of Shewanella oneidensis

31 March 2020

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Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments

31 March 2020

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Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

31 March 2020

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

31 March 2020

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Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

31 March 2020

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Genome-scale models of microbial cells: evaluating the consequences of constraints

31 March 2020

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A biochemical study of the intermediary carbon metabolism of Shewanella putrefaciens

31 March 2020

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Dissolution and reduction of magnetite by bacteria

31 March 2020

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Systems approach to refining genome annotation

31 March 2020

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Environmental genome shotgun sequencing of the Sargasso Sea

31 March 2020

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Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics

31 March 2020

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Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

31 March 2020

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Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

31 March 2020

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Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

31 March 2020

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Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome

31 March 2020

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The Pathway Tools software

31 March 2020

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The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC)

31 March 2020

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The pio operon is essential for phototrophic Fe(II) oxidation in Rhodopseudomonas palustris TIE-1.

31 March 2020

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31 March 2020

Bistability in bacteria

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Genotypic diversity within a natural coastal bacterioplankton population.

31 March 2020

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Code and context: Prochlorococcus as a model for cross-scale biology

31 March 2020

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Comparative metagenomics of microbial communities

31 March 2020

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Community proteomics of a natural microbial biofilm

31 March 2020

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Analysis of environmental transcriptomes by DNA microarrays.

31 March 2020

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Microbial community gene expression in ocean surface waters

31 March 2020

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Microbial ecology meets electrochemistry: electricity-driven and driving communities

31 March 2020

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Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants

31 March 2020

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The outer membrane cytochromes of Shewanella oneidensis MR-1 are lipoproteins

31 March 2020

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Dissimilatory Fe(III) and Mn(IV) reduction by Shewanella putrefaciens requires ferE, a homolog of the pulE (gspE) type II protein secretion gene

31 March 2020

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Cell surface exposure of the outer membrane cytochromes of Shewanella oneidensis MR-1.

31 March 2020

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Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1

31 March 2020

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High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome OmcA.

31 March 2020

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Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors

31 March 2020

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Shewanella secretes flavins that mediate extracellular electron transfer

31 March 2020

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Secretion of flavins by Shewanella species and their role in extracellular electron transfer

31 March 2020

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Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System

31 March 2020

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Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds.

31 March 2020

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Phylogeny and Abundance of Novel Denitrifying Bacteria Isolated from the Water Column of the Central Baltic Sea

31 March 2020

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Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction.

31 March 2020

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Shewanella halifaxensis sp. nov., a novel obligately respiratory and denitrifying psychrophile

31 March 2020

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Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean

31 March 2020

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Shewanella pealeana sp. nov., a member of the microbial community associated with the accessory nidamental gland of the squid Loligo pealei.

31 March 2020

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Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep-sea sediments from the west Pacific

31 March 2020

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The ars Detoxification System Is Advantageous but Not Required for As(V) Respiration by the Genetically Tractable Shewanella Species Strain ANA-3

31 March 2020

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DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes

31 March 2020

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Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov.

31 March 2020

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Shewanella woodyi sp. nov., an Exclusively Respiratory Luminous Bacterium Isolated from the Alboran Sea

31 March 2020

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Anaerobic electron acceptor chemotaxis in Shewanella putrefaciens

31 March 2020

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inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRMICRO1947

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18 August 2017

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