Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I. (Q37080336)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23685434 AND SRC:MED&resulttype=core&format=json

1 March 2020

title

Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I (English)

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1 March 2020

2

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1 March 2020

Yasuyuki Ohkawa

6

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1 March 2020

author name string

Jun Katahira

1

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1 March 2020

Hitomi Inoue

3

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1 March 2020

Yoshihiro Yoneda

4

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1 March 2020

Kazumitsu Maehara

5

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1 March 2020

language of work or name

English

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publication date

17 May 2013

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1 March 2020

published in

Nucleic Acids Research

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1 March 2020

volume

41

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issue

14

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1 March 2020

page(s)

7060-7072

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Creative Commons Attribution 3.0 Unported

1 March 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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29 September 2017

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Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping

29 September 2017

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29 September 2017

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29 September 2017

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The interface between transcription and mRNP export: from THO to THSC/TREX-2.

29 September 2017

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THOC5/FMIP, an mRNA export TREX complex protein, is essential for hematopoietic primitive cell survival in vivo

29 September 2017

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29 September 2017

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Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

29 September 2017

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29 September 2017

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Pre-mRNA processing reaches back to transcription and ahead to translation

29 September 2017

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Transcriptional termination enhances protein expression in human cells

29 September 2017

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Consistency analysis of redundant probe sets on affymetrix three-prime expression arrays and applications to differential mRNA processing

29 September 2017

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Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA

29 September 2017

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Model-based analysis of ChIP-Seq (MACS)

29 September 2017

1 reference

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Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation

29 September 2017

1 reference

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Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

29 September 2017

1 reference

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Quality control of mRNP in the nucleus

29 September 2017

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

29 September 2017

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Protein factors in pre-mRNA 3'-end processing.

29 September 2017

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RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

29 September 2017

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Definition of global and transcript-specific mRNA export pathways in metazoans

29 September 2017

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29 September 2017

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Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3'-UTRs

29 September 2017

1 reference

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An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries

29 September 2017

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Cell-type-specific signatures of microRNAs on target mRNA expression

29 September 2017

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A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping

29 September 2017

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Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition

29 September 2017

1 reference

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TREX, SR proteins and export of mRNA.

29 September 2017

1 reference

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Cotranscriptional recruitment of the serine-arginine-rich (SR)-like proteins Gbp2 and Hrb1 to nascent mRNA via the TREX complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation

29 September 2017

1 reference

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Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p

29 September 2017

1 reference

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On the importance of being co-transcriptional

29 September 2017

1 reference

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TREX is a conserved complex coupling transcription with messenger RNA export

29 September 2017

1 reference

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Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Inefficient processing impairs release of RNA from the site of transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human

29 September 2017

1 reference

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Cloning and characterization of three human cDNAs encoding mRNA (guanine-7-)-methyltransferase, an mRNA cap methylase

29 September 2017

1 reference

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Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Exon recognition in vertebrate splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

A conserved epitope on a subset of SR proteins defines a larger family of Pre-mRNA splicing factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

The Prp19 complex is a novel transcription elongation factor required for TREX occupancy at transcribed genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Crosstalk between mRNA 3' end processing and transcription initiation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Multifunctional factor ENY2 is associated with the THO complex and promotes its recruitment onto nascent mRNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Architecture and nucleic acids recognition mechanism of the THO complex, an mRNP assembly factor

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Keeping mRNPs in check during assembly and nuclear export.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

Modulation of Transcription Affects mRNP Quality

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737531

In vitro polyadenylation is stimulated by the presence of an upstream intron

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23685434

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mutation of the AAUAAA polyadenylation signal depresses in vitro splicing of proximal but not distal introns

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23685434

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT414

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23685434 AND SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23685434 AND SRC:MED&resulttype=core&format=json

1 March 2020

PubMed publication ID

23685434

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23685434 AND SRC:MED&resulttype=core&format=json