The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL (Q37063762)

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17 March 2020

title

The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL (English)

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17 March 2020

1

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17 March 2020

Kozo Tomita

3

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17 March 2020

Tetsuro Hirose

5

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17 March 2020

author name string

Seisuke Yamashita

2

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17 March 2020

Naoki Goshima

4

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17 March 2020

language of work or name

English

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publication date

1 July 2016

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17 March 2020

published in

Journal of Cell Biology

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17 March 2020

volume

214

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17 March 2020

issue

1

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17 March 2020

page(s)

45-59

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Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II

17 March 2020

cites work

1 reference

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Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization

29 September 2017

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Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles

29 September 2017

1 reference

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Architectural RNAs (arcRNAs): A class of long noncoding RNAs that function as the scaffold of nuclear bodies

29 September 2017

1 reference

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Genome-wide co-localization screening of nuclear body components using a fluorescently tagged FLJ cDNA clone library

29 September 2017

1 reference

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The building process of the functional paraspeckle with long non-coding RNAs

29 September 2017

1 reference

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The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice.

29 September 2017

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The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites

29 September 2017

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SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

29 September 2017

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Nuclear bodies: new insights into assembly/dynamics and disease relevance.

29 September 2017

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NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies

29 September 2017

1 reference

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Crystal structures and RNA-binding properties of the RNA recognition motifs of heterogeneous nuclear ribonucleoprotein L: insights into its roles in alternative splicing regulation

29 September 2017

1 reference

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Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles

29 September 2017

1 reference

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The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

29 September 2017

1 reference

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Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels

29 September 2017

1 reference

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DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation

29 September 2017

1 reference

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Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA

29 September 2017

1 reference

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RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Biogenesis and function of nuclear bodies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Gadd45a is an RNA binding protein and is localized in nuclear speckles.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Alternatively Expressed Domains of AU-rich Element RNA-binding Protein 1 (AUF1) Regulate RNA-binding Affinity, RNA-induced Protein Oligomerization, and the Local Conformation of Bound RNA Ligands

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

29 September 2017

Nuclear stress bodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Proteomic identification of heterogeneous nuclear ribonucleoprotein L as a novel component of SLM/Sam68 Nuclear Bodies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

29 September 2017

1 reference

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Sam68 regulates a set of alternatively spliced exons during neurogenesis

29 September 2017

1 reference

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The epigenetics of rRNA genes: from molecular to chromosome biology

29 September 2017

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Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites

29 September 2017

1 reference

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Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis

29 September 2017

1 reference

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Actin-dependent intranuclear repositioning of an active gene locus in vivo.

29 September 2017

1 reference

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Regulating gene expression through RNA nuclear retention

29 September 2017

1 reference

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P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner

29 September 2017

1 reference

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Promyelocytic leukemia nuclear bodies associate with transcriptionally active genomic regions

29 September 2017

1 reference

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29 September 2017

1 reference

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Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

A role for the GSG domain in localizing Sam68 to novel nuclear structures in cancer cell lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

A novel nuclear structure containing the survival of motor neurons protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Identification of a novel nuclear localization signal in Sam68.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

The long noncoding RNA Neat1 is required for mammary gland development and lactation.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Nuclear stress bodies: a heterochromatin affair?

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Mutations in gld-1, a female germ cell-specific tumor suppressor gene in Caenorhabditis elegans, affect a conserved domain also found in Src-associated protein Sam68

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

S. pombe mei2 encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932371

Paraspeckles: a novel nuclear domain

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27377249

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1083/JCB.201601024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27377249 AND SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27377249 AND SRC:MED&resulttype=core&format=json

17 March 2020

PubMed publication ID

27377249

1 reference