Structural plasticity and rapid evolution in a viral RNA revealed by in vivo genetic selection. (Q37033391)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19004956 AND SRC:MED&resulttype=core&format=json

17 January 2020

title

Structural plasticity and rapid evolution in a viral RNA revealed by in vivo genetic selection (English)

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17 January 2020

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5

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17 January 2020

4

Anne E Simon

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17 January 2020

author name string

Rong Guo

series ordinal

1

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17 January 2020

Wai Lin

series ordinal

2

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17 January 2020

Jiuchun Zhang

series ordinal

3

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17 January 2020

language of work or name

English

0 references

publication date

12 November 2008

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17 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19004956 AND SRC:MED&resulttype=core&format=json

17 January 2020

volume

83

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17 January 2020

issue

2

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17 January 2020

page(s)

927-939

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The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits

17 January 2020

cites work

1 reference

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Structural domains within the 3' untranslated region of Turnip crinkle virus.

29 September 2017

1 reference

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New insights into internal ribosome entry site elements relevant for viral gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs

29 September 2017

1 reference

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Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch Virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Analysis of the selective advantage conferred by a C-E1 fusion protein synthesized by rubella virus DI RNAs

29 September 2017

1 reference

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A pseudoknot in a preactive form of a viral RNA is part of a structural switch activating minus-strand synthesis

29 September 2017

1 reference

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A cis-replication element functions in both orientations to enhance replication of Turnip crinkle virus

29 September 2017

1 reference

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Long-Distance RNA-RNA Interactions in Plant Virus Gene Expression and Replication

29 September 2017

1 reference

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Evolution of virus-derived sequences for high-level replication of a subviral RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Conformational changes involved in initiation of minus-strand synthesis of a virus-associated RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Short internal sequences involved in replication and virion accumulation in a subviral RNA of turnip crinkle virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Defective interfering RNA hinders the activity of a tombusvirus-encoded posttranscriptional gene silencing suppressor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Plant virus satellite and defective interfering RNAs: new paradigms for a new century.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Biased hypermutagenesis associated with mutations in an untranslated hairpin of an RNA virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Fitness of a turnip crinkle virus satellite RNA correlates with a sequence-nonspecific hairpin and flanking sequences that enhance replication and repress the accumulation of virions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Mfold web server for nucleic acid folding and hybridization prediction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Turnip crinkle virus coat protein mediates suppression of RNA silencing in Nicotiana benthamiana.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Mutation rates among RNA viruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

RNA-dependent RNA polymerase from plants infected with turnip crinkle virus can transcribe ( )- and (-)-strands of virus-associated RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Turnip crinkle virus defective interfering RNAs intensify viral symptoms and are generated de novo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

In vitro selection of RNA molecules that bind specific ligands

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Turnip crinkle virus genes required for RNA replication and virus movement

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

A GCUA tetranucleotide loop found in the poliovirus oriL by in vivo SELEX (un)expectedly forms a YNMG-like structure: Extending the YNMG family with GYYA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

The virulent satellite RNA of turnip crinkle virus has a major domain homologous to the 3' end of the helper virus genome.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Importance of sequence and structural elements within a viral replication repressor

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Enhanced viral pathogenesis associated with a virulent mutant virus or a virulent satellite RNA correlates with reduced virion accumulation and abundance of free coat protein

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

A multifunctional turnip crinkle virus replication enhancer revealed by in vivo functional SELEX.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Requirement of a 5'-proximal linear sequence on minus strands for plus-strand synthesis of a satellite RNA associated with turnip crinkle virus

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Analysis of cis-acting sequences involved in plus-strand synthesis of a turnip crinkle virus-associated satellite RNA identifies a new carmovirus replication element

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612397

Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19004956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of a viral replication repressor: sequence requirements for a large symmetrical internal loop

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19004956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RNA folding pathway functional intermediates: their prediction and analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19004956

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.02060-08

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19004956 AND SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19004956 AND SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

19004956

1 reference