Atomic force microscopy reveals parallel mechanical unfolding pathways of T4 lysozyme: evidence for a kinetic partitioning mechanism. (Q36882953)

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2 January 2020

title

Atomic force microscopy reveals parallel mechanical unfolding pathways of T4 lysozyme: evidence for a kinetic partitioning mechanism (English)

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2 January 2020

2

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2 January 2020

author name string

Qing Peng

series ordinal

1

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2 January 2020

language of work or name

English

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publication date

6 February 2008

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Proceedings of the National Academy of Sciences of the United States of America

2 January 2020

published in

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2 January 2020

volume

105

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2 January 2020

issue

6

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2 January 2020

page(s)

1885-1890

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Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.

2 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Real-time control of the energy landscape by force directs the folding of RNA molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Exploring subdomain cooperativity in T4 lysozyme I: Structural and energetic studies of a circular permutant and protein fragment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Exploring subdomain cooperativity in T4 lysozyme II: uncovering the C-terminal subdomain as a hidden intermediate in the kinetic folding pathway

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

The folding pathway of T4 lysozyme: the high-resolution structure and folding of a hidden intermediate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

The folding pathway of T4 lysozyme: an on-pathway hidden folding intermediate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Anisotropic deformation response of single protein molecules.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Local and long-range stability in tandemly arrayed tetratricopeptide repeats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

RNA and protein folding: common themes and variations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Exploring the energy landscape of GFP by single-molecule mechanical experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Relocation or duplication of the helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Understanding protein folding via free-energy surfaces from theory and experiment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Native topology determines force-induced unfolding pathways in globular proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Mechanical unfolding intermediates in titin modules.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

The study of protein mechanics with the atomic force microscope

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Mechanical and chemical unfolding of a single protein: a comparison

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Theory of protein folding: the energy landscape perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Structural and genetic analysis of the folding and function of T4 lysozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

29 September 2017

How does a protein fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Kinetic traps in lysozyme folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Disulfide bonds and thermal stability in T4 lysozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

A mutant T4 lysozyme displays five different crystal conformations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

The energetics of T4 lysozyme reveal a hierarchy of conformations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Subdomain interactions as a determinant in the folding and stability of T4 lysozyme

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Detection of rare partially folded molecules in equilibrium with the native conformation of RNaseH.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Evidence for intermediates during unfolding and refolding of a two-domain protein: phage T4 lysozyme equilibrium and kinetic studies

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2538854

Hammond behavior versus ground state effects in protein folding: evidence for narrow free energy barriers and residual structure in unfolded states

27 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Force-clamp spectroscopy monitors the folding trajectory of a single protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Nonmechanical protein can have significant mechanical stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Mechanical unfolding intermediates observed by single-molecule force spectroscopy in a fibronectin type III module

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Details of the partial unfolding of T4 lysozyme on quartz using site-directed spin labeling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

Parallel protein-unfolding pathways revealed and mapped

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.0706775105

A mechanical unfolding intermediate in an actin-crosslinking protein

21 January 2018

1 reference

12 December 2020

Circular permutation of T4 lysozyme

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Multiple intermediates and transition states during protein unfolding

1 reference

12 December 2020

Protein conformational stabilities can be determined from hydrogen exchange rates

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0706775105

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18272500 AND SRC:MED&resulttype=core&format=json

2 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18272500 AND SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

18272500

1 reference